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Characterization of the complete chloroplast genome sequence of Gymnocoronis spilanthoides (Asteraceae, Eupatorieae) and its phylogenetic implications
Fu, Zhi-Xi; Wang, Xiu-Hua; Ou, Chuan-Zhou; Lu, Xin2; Hu, Jun3; He, Gang4; Tian, Xiang-Yu
2019
发表期刊MITOCHONDRIAL DNA PART B-RESOURCES
ISSN2380-2359
卷号4期号:1页码:694-695
摘要This study was the first report about complete chioroplast genome of Gymnocoronis spilanthoides (Asteraceae, Eupatorieae), a critically invasive plant. The circular whole cp genome of G. spilanthoides was 150,799 by in length, contained a large single-copy (LSC) region of 82,514 by and a small single-copy (SSC) region of 18,471 bp. These two regions were separated by a pair of inverted repeat regions (IRa and IRb), each of them 24,907 bp in length. A total of 135 functional genes were encoded, consisted of 89 protein-coding genes, 38 tRNA genes, and eight rRNA genes. The overall GC content of the chloroplast genome sequence was 37.5%, and the GC contents of the LSC, SSC, and IR regions were 35.6, 30.9, and 37.0%, respectively. The phylogenetic analysis by maximum likelihood showed that the G. spilanthoides was clustered into Glade of Mikania and Ageratina by strong support values, and thus was closely related to members of Heliantheae and Inuleae. These results will be useful for the future studies of the naturalized and potentially invasive aquatic alien in the worldwide.
关键词Gymnocoronis spilanthoides chloroplast genome phylogenomics analysis
学科领域Genetics & Heredity
DOI10.1080/23802359.2019.1574622
收录类别SCI
语种英语
WOS研究方向Genetics & Heredity
WOS记录号WOS:000460837400001
出版者TAYLOR & FRANCIS LTD
文献子类Article
出版地ABINGDON
资助机构Special Research Project of National Tradition Chinese Medicine Industry ; Fourth National Survey on Chinese Material Medica Resources, Sichuan Province [2018PC005] ; Project of Department of Laboratory and Equipment Management, Sichuan Normal University [KFSY2018031]
作者邮箱Xiangyt1989@yahoo.com
作品OA属性gold
引用统计
文献类型期刊论文
条目标识符http://ir.ibcas.ac.cn/handle/2S10CLM1/19474
专题系统与进化植物学国家重点实验室
作者单位1.Sichuan Normal Univ, Coll Life Sci, Chengdu, Sichuan, Peoples R China
2.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing, Peoples R China
3.Chengdu Customs Dist, Chengdu, Sichuan, Peoples R China
4.Chinese Acad Sci, Chengdu Inst Biol, Chengdu, Sichuan, Peoples R China
5.Chengdu Univ, Dept Key Lab Med & Edible Plant Resource Dev Sich, Chengdu, Sichuan, Peoples R China
6.Beijing Normal Univ, Coll Life Sci, Beijing, Peoples R China
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Fu, Zhi-Xi,Wang, Xiu-Hua,Ou, Chuan-Zhou,et al. Characterization of the complete chloroplast genome sequence of Gymnocoronis spilanthoides (Asteraceae, Eupatorieae) and its phylogenetic implications[J]. MITOCHONDRIAL DNA PART B-RESOURCES,2019,4(1):694-695.
APA Fu, Zhi-Xi.,Wang, Xiu-Hua.,Ou, Chuan-Zhou.,Lu, Xin.,Hu, Jun.,...&Tian, Xiang-Yu.(2019).Characterization of the complete chloroplast genome sequence of Gymnocoronis spilanthoides (Asteraceae, Eupatorieae) and its phylogenetic implications.MITOCHONDRIAL DNA PART B-RESOURCES,4(1),694-695.
MLA Fu, Zhi-Xi,et al."Characterization of the complete chloroplast genome sequence of Gymnocoronis spilanthoides (Asteraceae, Eupatorieae) and its phylogenetic implications".MITOCHONDRIAL DNA PART B-RESOURCES 4.1(2019):694-695.
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