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| Plant-GQ: An Integrative Database of G-Quadruplex in Plant | |
| Ge, Fangfang1; Wang, Yi2,3; Li, Huayang1; Zhang, Rui1; Wang, Xiaotong1; Li, Qingyun1; Liang, Zhenchang2,3; Yang, Long1 | |
| 2019 | |
| Source Publication | JOURNAL OF COMPUTATIONAL BIOLOGY
 |
| ISSN | 1066-5277 |
| Volume | 26Issue:9Pages:1013-1019 |
| Abstract | G-quadruplex (G-Q) is advanced DNA or RNA secondary structures frequently found in plant and involved in important biological processes such as transcription, translation, and telomere maintenance. Although some databases and tools were developed for predicting and studying G-Q, none of them was for plant. With the development of next-generation sequencing technology, a large number of plant genomes have been assembled and annotated to provide opportunities for mining G-Q. Plant G-quadruplex database (Plant-GQ) was constructed for predicting G-Q in 195 plants. It has a total of 626,341,645 predicted G-Qs. The database contains four major parts: Search, Tools, JBrowse, and Download. Not only G-Q information but also online forecasting tool can be retrieved and obtained from Plant-GQ. It can also browse and analyze G-Q information by JBrowse in a graph visualization interface. Considering the key role of G-Q in plant, this database will play an important status in the study of the structure, function, and biological relevance of G-Q in plant. |
| Keyword | database G-quadruplex plant |
| Subject Area | Biochemical Research Methods ; Biotechnology & Applied Microbiology ; Computer Science, Interdisciplinary Applications ; Mathematical & Computational Biology ; Statistics & Probability |
| DOI | 10.1089/cmb.2019.0010 |
| Indexed By | SCI |
| Language | 英语 |
| WOS Keyword | TELOMERIC G-QUADRUPLEX ; GENOME-WIDE ; DNA ; MOTIFS ; INHIBITION ; SEQUENCES ; PROMOTER ; REGION ; SERVER ; GENE |
| WOS Research Area | Biochemistry & Molecular Biology ; Biotechnology & Applied Microbiology ; Computer Science ; Mathematical & Computational Biology ; Mathematics |
| WOS ID | WOS:000463769200001 |
| Publisher | MARY ANN LIEBERT, INC |
| Special Issue | SI |
| Subtype | Article |
| Publication Place | NEW ROCHELLE |
| EISSN | 1557-8666 |
| Funding Organization | Foundation of Shandong Province Modern Agricultural Technology System Innovation Team [SDAIT-25-02] ; Open Project Program of Beijing Key Laboratory of Grape Science and Enology |
| Corresponding Author Email | lyang@sdau.edu.cn |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | http://ir.ibcas.ac.cn/handle/2S10CLM1/19612 |
| Collection | 中科院北方资源植物重点实验室 |
| Affiliation | 1.Shandong Agr Univ, Agr Big Data Res Ctr, Tai An 271018, Shandong, Peoples R China 2.Shandong Agr Univ, Coll Plant Protect, Tai An 271018, Shandong, Peoples R China 3.Chinese Acad Sci, Inst Bot, Beijing Key Lab Grape Sci & Enol, Beijing, Peoples R China 4.Chinese Acad Sci, Inst Bot, Key Lab Plant Resource, Beijing, Peoples R China |
| Recommended Citation GB/T 7714 | Ge, Fangfang,Wang, Yi,Li, Huayang,et al. Plant-GQ: An Integrative Database of G-Quadruplex in Plant[J]. JOURNAL OF COMPUTATIONAL BIOLOGY,2019,26(9):1013-1019. |
| APA | Ge, Fangfang.,Wang, Yi.,Li, Huayang.,Zhang, Rui.,Wang, Xiaotong.,...&Yang, Long.(2019).Plant-GQ: An Integrative Database of G-Quadruplex in Plant.JOURNAL OF COMPUTATIONAL BIOLOGY,26(9),1013-1019. |
| MLA | Ge, Fangfang,et al."Plant-GQ: An Integrative Database of G-Quadruplex in Plant".JOURNAL OF COMPUTATIONAL BIOLOGY 26.9(2019):1013-1019. |
| Files in This Item: | ||||||
| File Name/Size | DocType | Version | Access | License | ||
| Ge-2019-Plant-GQ_ An（407KB） | 期刊论文 | 出版稿 | 开放获取 | CC BY-NC-SA | View Application Full Text | |
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