Knowledge Management System Of Institute Of Botany,CAS
| Plant-GQ: An Integrative Database of G-Quadruplex in Plant | |
| Ge, Fangfang1; Wang, Yi2,3; Li, Huayang1; Zhang, Rui1; Wang, Xiaotong1; Li, Qingyun1; Liang, Zhenchang2,3; Yang, Long1 | |
| 2019 | |
| 发表期刊 | JOURNAL OF COMPUTATIONAL BIOLOGY
 |
| ISSN | 1066-5277 |
| 卷号 | 26期号:9页码:1013-1019 |
| 摘要 | G-quadruplex (G-Q) is advanced DNA or RNA secondary structures frequently found in plant and involved in important biological processes such as transcription, translation, and telomere maintenance. Although some databases and tools were developed for predicting and studying G-Q, none of them was for plant. With the development of next-generation sequencing technology, a large number of plant genomes have been assembled and annotated to provide opportunities for mining G-Q. Plant G-quadruplex database (Plant-GQ) was constructed for predicting G-Q in 195 plants. It has a total of 626,341,645 predicted G-Qs. The database contains four major parts: Search, Tools, JBrowse, and Download. Not only G-Q information but also online forecasting tool can be retrieved and obtained from Plant-GQ. It can also browse and analyze G-Q information by JBrowse in a graph visualization interface. Considering the key role of G-Q in plant, this database will play an important status in the study of the structure, function, and biological relevance of G-Q in plant. |
| 关键词 | database G-quadruplex plant |
| 学科领域 | Biochemical Research Methods ; Biotechnology & Applied Microbiology ; Computer Science, Interdisciplinary Applications ; Mathematical & Computational Biology ; Statistics & Probability |
| DOI | 10.1089/cmb.2019.0010 |
| 收录类别 | SCI |
| 语种 | 英语 |
| WOS关键词 | TELOMERIC G-QUADRUPLEX ; GENOME-WIDE ; DNA ; MOTIFS ; INHIBITION ; SEQUENCES ; PROMOTER ; REGION ; SERVER ; GENE |
| WOS研究方向 | Biochemistry & Molecular Biology ; Biotechnology & Applied Microbiology ; Computer Science ; Mathematical & Computational Biology ; Mathematics |
| WOS记录号 | WOS:000463769200001 |
| 出版者 | MARY ANN LIEBERT, INC |
| Special Issue | SI |
| 文献子类 | Article |
| 出版地 | NEW ROCHELLE |
| EISSN | 1557-8666 |
| 资助机构 | Foundation of Shandong Province Modern Agricultural Technology System Innovation Team [SDAIT-25-02] ; Open Project Program of Beijing Key Laboratory of Grape Science and Enology |
| 作者邮箱 | lyang@sdau.edu.cn |
| 引用统计 | |
| 文献类型 | 期刊论文 |
| 条目标识符 | http://ir.ibcas.ac.cn/handle/2S10CLM1/19612 |
| 专题 | 中科院北方资源植物重点实验室 |
| 作者单位 | 1.Shandong Agr Univ, Agr Big Data Res Ctr, Tai An 271018, Shandong, Peoples R China 2.Shandong Agr Univ, Coll Plant Protect, Tai An 271018, Shandong, Peoples R China 3.Chinese Acad Sci, Inst Bot, Beijing Key Lab Grape Sci & Enol, Beijing, Peoples R China 4.Chinese Acad Sci, Inst Bot, Key Lab Plant Resource, Beijing, Peoples R China |
| 推荐引用方式 GB/T 7714 | Ge, Fangfang,Wang, Yi,Li, Huayang,et al. Plant-GQ: An Integrative Database of G-Quadruplex in Plant[J]. JOURNAL OF COMPUTATIONAL BIOLOGY,2019,26(9):1013-1019. |
| APA | Ge, Fangfang.,Wang, Yi.,Li, Huayang.,Zhang, Rui.,Wang, Xiaotong.,...&Yang, Long.(2019).Plant-GQ: An Integrative Database of G-Quadruplex in Plant.JOURNAL OF COMPUTATIONAL BIOLOGY,26(9),1013-1019. |
| MLA | Ge, Fangfang,et al."Plant-GQ: An Integrative Database of G-Quadruplex in Plant".JOURNAL OF COMPUTATIONAL BIOLOGY 26.9(2019):1013-1019. |
| 条目包含的文件 | ||||||
| 文件名称/大小 | 文献类型 | 版本类型 | 开放类型 | 使用许可 | ||
| Ge-2019-Plant-GQ_ An（407KB） | 期刊论文 | 出版稿 | 开放获取 | CC BY-NC-SA | 浏览 请求全文 | |
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