IB-CAS  > 系统与进化植物学国家重点实验室
Genome Sequence of Striga asiatica Provides Insight into the Evolution of Plant Parasitism
Yoshida, Satoko1,2; Kim, Seungill; Wafula, Eric K.; Tanskanen, Jaakko; Kim, Yong-Min; Honaas, Loren32; Yang, Zhenzhen; Spallek, Thomas10; Conn, Caitlin E.; Ichihashi, Yasunori12; Cheong, Kyeongchae; Cui, Songkui2; Der, Joshua P.; Gundlach, Heidrun14; Jiao, Yuannian33; Hori, Chiaki15; Ishida, Juliane K.; Kasahara, Hiroyuki16; Kiba, Takatoshi17; Kim, Myung-Shin; Koo, Namjin9; Laohavisit, Anuphon; Lee, Yong-Hwan; Lumba, Shelley19; McCourt, Peter19; Mortimer, Jenny C.; Mutuku, J. Musembi; Nomura, Takahito23; Sasaki-Sekimoto, Yuko; Seto, Yoshiya25,26; Wang, Yu; Wakatake, Takanori28; Sakakibara, Hitoshi17; Demura, Taku1; Yamaguchi, Shinjiro25,29; Yoneyama, Koichi23; Manabe, Ri-ichiroh; Nelson, David C.; Schulman, Alan H.; Timko, Michael P.; DePamphilis, Claude W.; Choi, Doil3,4; Shirasu, Ken28
2019
Source PublicationCURRENT BIOLOGY
ISSN0960-9822
Volume29Issue:18Pages:3041+
AbstractParasitic plants in the genus Striga, commonly known as witchweeds, cause major crop losses in sub-Saharan Africa and pose a threat to agriculture worldwide. An understanding of Striga parasite biology, which could lead to agricultural solutions, has been hampered by the lack of genome information. Here, we report the draft genome sequence of Striga asiatica with 34,577 predicted protein-coding genes, which reflects gene family contractions and expansions that are consistent with a three-phase model of parasitic plant genome evolution. Striga seeds germinate in response to host-derived strigolactones (SLs) and then develop a specialized penetration structure, the haustorium, to invade the host root. A family of SL receptors has undergone a striking expansion, suggesting a molecular basis for the evolution of broad host range among Striga spp. We found that genes involved in lateral root development in non-parasitic model species are coordinately induced during haustorium development in Striga, suggesting a pathway that was partly co-opted during the evolution of the haustorium. In addition, we found evidence for horizontal transfer of host genes as well as retrotransposons, indicating gene flow to S. asiatica from hosts. Our results provide valuable insights into the evolution of parasitism and a key resource for the future development of Striga control strategies.
Subject AreaBiochemistry & Molecular Biology ; Biology ; Cell Biology
DOI10.1016/j.cub.2019.07.086
Indexed BySCI
Language英语
WOS KeywordHORIZONTAL GENE-TRANSFER ; STRIGOLACTONE RECEPTORS ; PHYLOGENETIC ANALYSIS ; MESSENGER-RNA ; TOOL ; RESPONSES ; STEREOISOMERS ; GERMINATION ; WITCHWEED ; ALIGNMENT
WOS Research AreaBiochemistry & Molecular Biology ; Life Sciences & Biomedicine - Other Topics ; Cell Biology
WOS IDWOS:000487251300022
PublisherCELL PRESS
SubtypeArticle
Publication PlaceCAMBRIDGE
EISSN1879-0445
Funding OrganizationMEXT KAKENHIMinistry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of ScienceGrants-in-Aid for Scientific Research (KAKENHI) [24228008, 15H05959, 17H06172, 18H02464, 18H04838, 15K18589, 17H06474, 17H06473, 25891029, 17K15142] ; JSPS Postdoctoral FellowshipMinistry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of Science ; JSPS Research Fellowship for Young ScientistMinistry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of Science ; RIKEN Special Postdoctoral Researchers Program ; NSF Postdoctoral Research Fellowship [1711545] ; Academy of FinlandAcademy of FinlandEuropean Commission [266430] ; NSFNational Science Foundation (NSF) [IOS-1737153, IOS-1740560, IOS-1238057, IOS-1213059] ; MEXT Cell Innovation program ; International Atomic Energy Agency ResearchInternational Atomic Energy Agency [20645, 20634] ; NSERCNatural Sciences and Engineering Research Council of Canada (NSERC) ; Basic Science Research Program through the National Research Foundation of Korea (NRF) - Ministry of Education [NRF-2017R1A6A3A04004014] ; Agricultural Genome Center of the Next Generation Biogreen 21 Program of RDA [PJ013153] ; RIKEN president fund ; CSC - IT Centre for Science [hy7047] ; Kirkhouse Trust ; DOE Joint BioEnergy Institute - U.S. Department of EnergyUnited States Department of Energy (DOE) [DE-AC02-05CH11231]
Corresponding Author Emailken.shirasu@riken.jp
OABronze, Green Accepted, Green Published
Citation statistics
Cited Times:51[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.ibcas.ac.cn/handle/2S10CLM1/19642
Collection系统与进化植物学国家重点实验室
Affiliation1.RIKEN, Ctr Sustainable Resource Sci, Yokohama, Kanagawa 2300045, Japan
2.Nara Inst Sci & Technol, Grad Sch Sci & Technol, Ikoma, Nara 6300192, Japan
3.Nara Inst Sci & Technol, Div Res Strategy, Inst Res Initiatives, Ikoma, Nara 6300192, Japan
4.Seoul Natl Univ, Interdisciplinary Program Agr Genom, Seoul 151742, South Korea
5.Seoul Natl Univ, Plant Genom & Breeding Inst, Seoul 151742, South Korea
6.Wafula, Eric K.; Honaas, Loren; Yang, Zhenzhen; DePamphilis, Claude W.] Penn State Univ, Dept Biol, University Pk, PA 16802 USA
7.Tanskanen, Jaakko; Schulman, Alan H.] Luke Nat Resources Inst Finland, Prod Syst, Helsinki 00790, Finland
8.Tanskanen, Jaakko; Schulman, Alan H.] Univ Helsinki, Inst Biotechnol, Luke BI Plant Genom Lab, FIN-00014 Helsinki, Finland
9.Tanskanen, Jaakko; Schulman, Alan H.] Univ Helsinki, Viikki Plant Sci Ctr, FIN-00014 Helsinki, Finland
10.Korea Res Inst Biosci & Biotechnol, Korean Bioinformat Ctr, Daejon 305806, South Korea
11.Univ Hohenheim, Inst Plant Physiol & Biochem, D-70599 Stuttgart, Germany
12.Conn, Caitlin E.; Nelson, David C.] Univ Georgia, Dept Genet, Athens, GA 30602 USA
13.RIKEN, BioResource Res Ctr, Tsukuba, Ibaraki 3050074, Japan
14.Der, Joshua P.] Calif State Univ Fullerton, Dept Biol Sci, Fullerton, CA 92831 USA
15.Helmholtz Ctr Munich, PGSB, D-85764 Neuherberg, Germany
16.Hokkaido Univ, Res Fac Engn, Sapporo, Hokkaido 0608628, Japan
17.Tokyo Univ Agr & Technol, Inst Global Innovat Res, Fuchu, Tokyo 1838509, Japan
18.Nagoya Univ, Grad Sch Bioagr Sci, Dept Appl Biosci, Chikusa Ku, Nagoya, Aichi 4648601, Japan
19.Seoul Natl Univ, Dept Agr Biotechnol, Seoul, South Korea
20.Univ Toronto, Dept Cell & Syst Biol, Toronto, ON M55 3B2, Canada
21.Mortimer, Jenny C.] Joint BioEnergy Inst, Emeryville, CA 94608 USA
22.Mortimer, Jenny C.] Lawrence Berkeley Natl Lab, Environm Genom & Syst Biol Div, Berkeley, CA 94720 USA
23.Biosci Eastern & Cent Africa Int Livestock Res In, Nairobi 00100, Kenya
24.Utsunomiya Univ, Ctr Biosci Res & Educ, Utsunomiya, Tochigi 3218505, Japan
25.Tokyo Inst Technol, Sch Life Sci & Technol, Yokohama, Kanagawa 2268501, Japan
26.Tohoku Univ, Grad Sch Life Sci, Sendai, Miyagi 9808577, Japan
27.Meiji Univ, Sch Agr, Dept Agr Chem, Kawasaki, Kanagawa 2148571, Japan
28.Wang, Yu; Timko, Michael P.] Univ Virginia, Dept Biol, Gilmer Hall, Charlottesville, VA 22903 USA
29.Univ Tokyo, Grad Sch Sci, Bunkyo Ku, Bunkyo, Tokyo 1130033, Japan
30.Kyoto Univ, Inst Chem Res, Uji, Kyoto 6110011, Japan
31.RIKEN, Ctr Life Sci Technol, Div Genom Technol, Yokohama, Kanagawa 2300045, Japan
32.Nelson, David C.] Univ Calif Riverside, Dept Bot & Plant Sci, Riverside, CA 92521 USA
33.USDA ARS, Wenatchee, WA USA
34.Chinese Acad Sci, Inst Bot, Beijing, Peoples R China
Recommended Citation
GB/T 7714
Yoshida, Satoko,Kim, Seungill,Wafula, Eric K.,et al. Genome Sequence of Striga asiatica Provides Insight into the Evolution of Plant Parasitism[J]. CURRENT BIOLOGY,2019,29(18):3041+.
APA Yoshida, Satoko.,Kim, Seungill.,Wafula, Eric K..,Tanskanen, Jaakko.,Kim, Yong-Min.,...&Shirasu, Ken.(2019).Genome Sequence of Striga asiatica Provides Insight into the Evolution of Plant Parasitism.CURRENT BIOLOGY,29(18),3041+.
MLA Yoshida, Satoko,et al."Genome Sequence of Striga asiatica Provides Insight into the Evolution of Plant Parasitism".CURRENT BIOLOGY 29.18(2019):3041+.
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