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Genome Sequence of Striga asiatica Provides Insight into the Evolution of Plant Parasitism | |
Yoshida, Satoko1,2; Kim, Seungill; Wafula, Eric K.; Tanskanen, Jaakko; Kim, Yong-Min; Honaas, Loren32; Yang, Zhenzhen; Spallek, Thomas10; Conn, Caitlin E.; Ichihashi, Yasunori12; Cheong, Kyeongchae; Cui, Songkui2; Der, Joshua P.; Gundlach, Heidrun14; Jiao, Yuannian33; Hori, Chiaki15; Ishida, Juliane K.; Kasahara, Hiroyuki16; Kiba, Takatoshi17; Kim, Myung-Shin; Koo, Namjin9; Laohavisit, Anuphon; Lee, Yong-Hwan; Lumba, Shelley19; McCourt, Peter19; Mortimer, Jenny C.; Mutuku, J. Musembi; Nomura, Takahito23; Sasaki-Sekimoto, Yuko; Seto, Yoshiya25,26; Wang, Yu; Wakatake, Takanori28; Sakakibara, Hitoshi17; Demura, Taku1; Yamaguchi, Shinjiro25,29; Yoneyama, Koichi23; Manabe, Ri-ichiroh; Nelson, David C.; Schulman, Alan H.; Timko, Michael P.; DePamphilis, Claude W.; Choi, Doil3,4; Shirasu, Ken28 | |
2019 | |
发表期刊 | CURRENT BIOLOGY |
ISSN | 0960-9822 |
卷号 | 29期号:18页码:3041+ |
摘要 | Parasitic plants in the genus Striga, commonly known as witchweeds, cause major crop losses in sub-Saharan Africa and pose a threat to agriculture worldwide. An understanding of Striga parasite biology, which could lead to agricultural solutions, has been hampered by the lack of genome information. Here, we report the draft genome sequence of Striga asiatica with 34,577 predicted protein-coding genes, which reflects gene family contractions and expansions that are consistent with a three-phase model of parasitic plant genome evolution. Striga seeds germinate in response to host-derived strigolactones (SLs) and then develop a specialized penetration structure, the haustorium, to invade the host root. A family of SL receptors has undergone a striking expansion, suggesting a molecular basis for the evolution of broad host range among Striga spp. We found that genes involved in lateral root development in non-parasitic model species are coordinately induced during haustorium development in Striga, suggesting a pathway that was partly co-opted during the evolution of the haustorium. In addition, we found evidence for horizontal transfer of host genes as well as retrotransposons, indicating gene flow to S. asiatica from hosts. Our results provide valuable insights into the evolution of parasitism and a key resource for the future development of Striga control strategies. |
学科领域 | Biochemistry & Molecular Biology ; Biology ; Cell Biology |
DOI | 10.1016/j.cub.2019.07.086 |
收录类别 | SCI |
语种 | 英语 |
WOS关键词 | HORIZONTAL GENE-TRANSFER ; STRIGOLACTONE RECEPTORS ; PHYLOGENETIC ANALYSIS ; MESSENGER-RNA ; TOOL ; RESPONSES ; STEREOISOMERS ; GERMINATION ; WITCHWEED ; ALIGNMENT |
WOS研究方向 | Biochemistry & Molecular Biology ; Life Sciences & Biomedicine - Other Topics ; Cell Biology |
WOS记录号 | WOS:000487251300022 |
出版者 | CELL PRESS |
文献子类 | Article |
出版地 | CAMBRIDGE |
EISSN | 1879-0445 |
资助机构 | MEXT KAKENHIMinistry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of ScienceGrants-in-Aid for Scientific Research (KAKENHI) [24228008, 15H05959, 17H06172, 18H02464, 18H04838, 15K18589, 17H06474, 17H06473, 25891029, 17K15142] ; JSPS Postdoctoral FellowshipMinistry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of Science ; JSPS Research Fellowship for Young ScientistMinistry of Education, Culture, Sports, Science and Technology, Japan (MEXT)Japan Society for the Promotion of Science ; RIKEN Special Postdoctoral Researchers Program ; NSF Postdoctoral Research Fellowship [1711545] ; Academy of FinlandAcademy of FinlandEuropean Commission [266430] ; NSFNational Science Foundation (NSF) [IOS-1737153, IOS-1740560, IOS-1238057, IOS-1213059] ; MEXT Cell Innovation program ; International Atomic Energy Agency ResearchInternational Atomic Energy Agency [20645, 20634] ; NSERCNatural Sciences and Engineering Research Council of Canada (NSERC) ; Basic Science Research Program through the National Research Foundation of Korea (NRF) - Ministry of Education [NRF-2017R1A6A3A04004014] ; Agricultural Genome Center of the Next Generation Biogreen 21 Program of RDA [PJ013153] ; RIKEN president fund ; CSC - IT Centre for Science [hy7047] ; Kirkhouse Trust ; DOE Joint BioEnergy Institute - U.S. Department of EnergyUnited States Department of Energy (DOE) [DE-AC02-05CH11231] |
作者邮箱 | ken.shirasu@riken.jp |
作品OA属性 | Bronze, Green Accepted, Green Published |
引用统计 | |
文献类型 | 期刊论文 |
条目标识符 | http://ir.ibcas.ac.cn/handle/2S10CLM1/19642 |
专题 | 系统与进化植物学国家重点实验室 |
作者单位 | 1.RIKEN, Ctr Sustainable Resource Sci, Yokohama, Kanagawa 2300045, Japan 2.Nara Inst Sci & Technol, Grad Sch Sci & Technol, Ikoma, Nara 6300192, Japan 3.Nara Inst Sci & Technol, Div Res Strategy, Inst Res Initiatives, Ikoma, Nara 6300192, Japan 4.Seoul Natl Univ, Interdisciplinary Program Agr Genom, Seoul 151742, South Korea 5.Seoul Natl Univ, Plant Genom & Breeding Inst, Seoul 151742, South Korea 6.Wafula, Eric K.; Honaas, Loren; Yang, Zhenzhen; DePamphilis, Claude W.] Penn State Univ, Dept Biol, University Pk, PA 16802 USA 7.Tanskanen, Jaakko; Schulman, Alan H.] Luke Nat Resources Inst Finland, Prod Syst, Helsinki 00790, Finland 8.Tanskanen, Jaakko; Schulman, Alan H.] Univ Helsinki, Inst Biotechnol, Luke BI Plant Genom Lab, FIN-00014 Helsinki, Finland 9.Tanskanen, Jaakko; Schulman, Alan H.] Univ Helsinki, Viikki Plant Sci Ctr, FIN-00014 Helsinki, Finland 10.Korea Res Inst Biosci & Biotechnol, Korean Bioinformat Ctr, Daejon 305806, South Korea 11.Univ Hohenheim, Inst Plant Physiol & Biochem, D-70599 Stuttgart, Germany 12.Conn, Caitlin E.; Nelson, David C.] Univ Georgia, Dept Genet, Athens, GA 30602 USA 13.RIKEN, BioResource Res Ctr, Tsukuba, Ibaraki 3050074, Japan 14.Der, Joshua P.] Calif State Univ Fullerton, Dept Biol Sci, Fullerton, CA 92831 USA 15.Helmholtz Ctr Munich, PGSB, D-85764 Neuherberg, Germany 16.Hokkaido Univ, Res Fac Engn, Sapporo, Hokkaido 0608628, Japan 17.Tokyo Univ Agr & Technol, Inst Global Innovat Res, Fuchu, Tokyo 1838509, Japan 18.Nagoya Univ, Grad Sch Bioagr Sci, Dept Appl Biosci, Chikusa Ku, Nagoya, Aichi 4648601, Japan 19.Seoul Natl Univ, Dept Agr Biotechnol, Seoul, South Korea 20.Univ Toronto, Dept Cell & Syst Biol, Toronto, ON M55 3B2, Canada 21.Mortimer, Jenny C.] Joint BioEnergy Inst, Emeryville, CA 94608 USA 22.Mortimer, Jenny C.] Lawrence Berkeley Natl Lab, Environm Genom & Syst Biol Div, Berkeley, CA 94720 USA 23.Biosci Eastern & Cent Africa Int Livestock Res In, Nairobi 00100, Kenya 24.Utsunomiya Univ, Ctr Biosci Res & Educ, Utsunomiya, Tochigi 3218505, Japan 25.Tokyo Inst Technol, Sch Life Sci & Technol, Yokohama, Kanagawa 2268501, Japan 26.Tohoku Univ, Grad Sch Life Sci, Sendai, Miyagi 9808577, Japan 27.Meiji Univ, Sch Agr, Dept Agr Chem, Kawasaki, Kanagawa 2148571, Japan 28.Wang, Yu; Timko, Michael P.] Univ Virginia, Dept Biol, Gilmer Hall, Charlottesville, VA 22903 USA 29.Univ Tokyo, Grad Sch Sci, Bunkyo Ku, Bunkyo, Tokyo 1130033, Japan 30.Kyoto Univ, Inst Chem Res, Uji, Kyoto 6110011, Japan 31.RIKEN, Ctr Life Sci Technol, Div Genom Technol, Yokohama, Kanagawa 2300045, Japan 32.Nelson, David C.] Univ Calif Riverside, Dept Bot & Plant Sci, Riverside, CA 92521 USA 33.USDA ARS, Wenatchee, WA USA 34.Chinese Acad Sci, Inst Bot, Beijing, Peoples R China |
推荐引用方式 GB/T 7714 | Yoshida, Satoko,Kim, Seungill,Wafula, Eric K.,et al. Genome Sequence of Striga asiatica Provides Insight into the Evolution of Plant Parasitism[J]. CURRENT BIOLOGY,2019,29(18):3041+. |
APA | Yoshida, Satoko.,Kim, Seungill.,Wafula, Eric K..,Tanskanen, Jaakko.,Kim, Yong-Min.,...&Shirasu, Ken.(2019).Genome Sequence of Striga asiatica Provides Insight into the Evolution of Plant Parasitism.CURRENT BIOLOGY,29(18),3041+. |
MLA | Yoshida, Satoko,et al."Genome Sequence of Striga asiatica Provides Insight into the Evolution of Plant Parasitism".CURRENT BIOLOGY 29.18(2019):3041+. |
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