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| A Chromosome-Scale Genome Assembly of Paper Mulberry (Broussonetia papyrifera) Provides New Insights into Its Forage and Papermaking Usage | |
Peng, Xianjun; Liu, Hui; Chen, Peilin; Tang, Feng; Hu, Yanmin; Wang, Fenfen; Pi, Zhi; Zhao, Meiling; Chen, Naizhi; Chen, Hui; Zhang, Xiaokang; Yan, Xueqing; Liu, Min2; Fu, Xiaojun2; Zhao, Guofeng2; Yao, Pu2; Wang, Lili2; Dai, He2; Li, Xuming2; Xiong, Wei3; Xu, Wencai4; Zheng, Hongkun2; Yu, Haiyan2; Shen, Shihua1
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| 2019 | |
| Source Publication | MOLECULAR PLANT
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| ISSN | 1674-2052 |
| Volume | 12Issue:5Pages:661-677 |
| Abstract | Paper mulberry (Broussonetia papyrifera) is a well-known woody tree historically used for Cai Lun papermaking, one of the four great inventions of ancient China. More recently, Paper mulberry has also been used as forage to address the shortage of feedstuff because of its digestible crude fiber and high protein contents. In this study, we obtained a chromosome-scale genome assembly for Paper mulberry using integrated approaches, including Illumine and PacBio sequencing platform as well as Hi-C, optical, and genetic maps. The assembled Paper mulberry genome consists of 386.83 Mb, which is close to the estimated size, and 99.25% (383.93 Mb) of the assembly was assigned to 13 pseudochromosomes. Comparative genomic analysis revealed the expansion and contraction in the flavonoid and lignin biosynthetic gene families, respectively, accounting for the enhanced flavonoid and decreased lignin biosynthesis in Paper mulberry. Moreover, the increased ratio of syringyl-lignin to guaiacyl-lignin in Paper mulberry underscores its suitability for use in medicine, forage, papermaking, and barkcloth making. We also identified the root-associated microbiota of Paper mulberry and found that Pseudomonas and Rhizobia were enriched in its roots and may provide the source of nitrogen for its stems and leaves via symbiotic nitrogen fixation. Collectively, these results suggest that Paper mulberry might have undergone adaptive evolution and recruited nitrogen-fixing microbes to promote growth by enhancing flavonoid production and altering lignin monomer composition. Our study provides significant insights into genetic basis of the usefulness of Paper mulberry in papermaking and barkcloth making, and as forage. These insights will facilitate further domestication and selection as well as industrial utilization of Paper mulberry worldwide. |
| Keyword | forage plant barkcloth making nitrogen fixation comparative genomics genomics plant-microbe interactions |
| Subject Area | Biochemistry & Molecular Biology ; Plant Sciences |
| DOI | 10.1016/j.molp.2019.01.021 |
| Indexed By | SCI |
| Language | 英语 |
| WOS Keyword | DRAFT GENOME ; COMPREHENSIVE ANALYSIS ; PHYLOGENETIC ANALYSIS ; SEQUENCE ; LIGNIN ; IDENTIFICATION ; PROTEIN ; BIOSYNTHESIS ; RHIZOSPHERE ; EVOLUTION |
| WOS Research Area | Biochemistry & Molecular Biology ; Plant Sciences |
| WOS ID | WOS:000466958300008 |
| Publisher | CELL PRESS |
| Subtype | Article |
| Publication Place | CAMBRIDGE |
| EISSN | 1752-9867 |
| Funding Organization | National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31770360, 31870247] ; Poverty Relief Project of the Chinese Academy of Sciences [KFJ-FP-24] ; Huimin Technology Demonstration Project of the National Modern Agricultural Science and Technology Achievements City [Z151100001015008] |
| Corresponding Author Email | yuhy@biomarker.com.cn ; shshen@ibcas.ac.cn |
| OA | Bronze |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | http://ir.ibcas.ac.cn/handle/2S10CLM1/19649 |
| Collection | 中科院北方资源植物重点实验室 |
| Affiliation | 1.Chinese Acad Sci, Inst Bot, Key Lab Plant Resources, Beijing 100093, Peoples R China 2.ChuangGou Sci & Technol Co Ltd, Beijing 100049, Peoples R China 3.Biomarker Technol Corp, Beijing 101300, Peoples R China 4.Quick Green Biotec Co Ltd, Dalian 116600, Peoples R China 5.Beijing Jonathan Sci & Technol Dev Co Ltd, Beijing 101314, Peoples R China |
| Recommended Citation GB/T 7714 | Peng, Xianjun,Liu, Hui,Chen, Peilin,et al. A Chromosome-Scale Genome Assembly of Paper Mulberry (Broussonetia papyrifera) Provides New Insights into Its Forage and Papermaking Usage[J]. MOLECULAR PLANT,2019,12(5):661-677. |
| APA | Peng, Xianjun.,Liu, Hui.,Chen, Peilin.,Tang, Feng.,Hu, Yanmin.,...&Shen, Shihua.(2019).A Chromosome-Scale Genome Assembly of Paper Mulberry (Broussonetia papyrifera) Provides New Insights into Its Forage and Papermaking Usage.MOLECULAR PLANT,12(5),661-677. |
| MLA | Peng, Xianjun,et al."A Chromosome-Scale Genome Assembly of Paper Mulberry (Broussonetia papyrifera) Provides New Insights into Its Forage and Papermaking Usage".MOLECULAR PLANT 12.5(2019):661-677. |
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| File Name/Size | DocType | Version | Access | License | ||
| j.molp.2019.01.021.p（3359KB） | 期刊论文 | 出版稿 | 开放获取 | CC BY-NC-SA | View Application Full Text | |
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