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| Whole-genome resequencing of 472 Vitis accessions for grapevine diversity and demographic history analyses | |
Liang, Zhenchang1; Duan, Shengchang2,3; Sheng, Jun2,4,5; Zhu, Shusheng2,5; Ni, Xuemei6,7; Shao, Jianhui5; Liu, Chonghuai8; Nick, Peter9; Du, Fei5; Fan, Peige; Mao, Ruzhi5; Zhu, Yifan2,5; Deng, Weiping5; Yang, Min5; Huang, Huichuan5; Liu, Yixiang5; Ding, Yiqing10; Liu, Xianju10; Jiang, Jianfu8; Zhu, Youyong2,4,5; Li, Shaohua ; He, Xiahong2,5; Chen, Wei2,4; Dong, Yang2,4
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| 2019 | |
| 发表期刊 | NATURE COMMUNICATIONS
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| ISSN | 2041-1723 |
| 卷号 | 10 |
| 摘要 | Understanding the Vitis species at the genomic level is important for cultivar improvement of grapevine. Here we report whole-genome genetic variation at single-base resolution of 472 Vitis accessions, which cover 48 out of 60 extant Vitis species from a wide geographic distribution. The variation helps to identify a recent dramatic expansion and contraction of effective population size in the domesticated grapevines and that cultivars from the pan Black Sea region have a unique demographic history in comparison to the other domesticated cultivars. We also find selective sweeps for berry edibility and stress resistance improvement. Furthermore, we find associations between candidate genes and important agronomic traits, such as berry shape and aromatic compounds. These results demonstrate resource value of the resequencing data for illuminating the evolutionary biology of Vitis species and providing targets for grapevine genetic improvement. |
| 学科领域 | Multidisciplinary Sciences |
| DOI | 10.1038/s41467-019-09135-8 |
| 收录类别 | SCI |
| 语种 | 英语 |
| WOS关键词 | GENETIC DIVERSITY ; DOMESTICATION HISTORY ; PHYLOGENETIC ANALYSIS ; WILD ; VINIFERA ; REVEALS ; ASSOCIATION ; THOUSANDS ; ALIGNMENT ; MUTATION |
| WOS研究方向 | Science & Technology - Other Topics |
| WOS记录号 | WOS:000461022600003 |
| 出版者 | NATURE PUBLISHING GROUP |
| 文献子类 | Article |
| 出版地 | LONDON |
| 资助机构 | National Key Research and Development Program of China [2018YFD1000105] ; State Key Laboratory of Agricultural Genomics [2011DQ782025] ; Key Lab of Agricultural Genomics (Chinese Ministry of Agriculture), the Agricultural Breeding Project of Ningxia Hui Autonomous Region [NXNYYZ20150203] |
| 作者邮箱 | hexiahong@ynau.edu.cn ; wchenntr@gmail.com ; loyalyang@163.com |
| 作品OA属性 | gold, Green Published |
| 引用统计 | |
| 文献类型 | 期刊论文 |
| 条目标识符 | http://ir.ibcas.ac.cn/handle/2S10CLM1/19709 |
| 专题 | 中科院北方资源植物重点实验室 |
| 作者单位 | 1.Chinese Acad Sci, Inst Bot, Beijing Key Lab Grape Sci & Enol, Lab Plant Resources, Beijing 100093, Peoples R China 2.Chinese Acad Sci, Sino Africa Joint Res Ctr, Wuhan 430074, Hubei, Peoples R China 3.Yunnan Agr Univ, State Key Lab Conservat & Utilizat Bioresources, Kunming 650201, Yunnan, Peoples R China 4.Nowbio Biotechnol Co, Kunming 650201, Yunnan, Peoples R China 5.Yunnan Res Inst Local Plateau Agr & Ind, Kunming 650201, Yunnan, Peoples R China 6.Yunnan Agr Univ, Key Lab Agro Biodivers & Pest Control, Minist Educ, Kunming 650201, Yunnan, Peoples R China 7.BGI Shenzhen, BGI, Shenzhen 518120, Peoples R China 8.BGI Shenzhen, BGI Inst Appl Agr, Shenzhen 518120, Peoples R China 9.Chinese Acad Agr Sci, Zhengzhou Fruit Res Inst, Zhengzhou 450009, Henan, Peoples R China 10.Karlsruhe Inst Technol, Bot Inst, D-76128 Karlsruhe, Germany 11.Univ Chinese Acad Sci, Beijing 100049, Peoples R China |
| 推荐引用方式 GB/T 7714 | Liang, Zhenchang,Duan, Shengchang,Sheng, Jun,et al. Whole-genome resequencing of 472 Vitis accessions for grapevine diversity and demographic history analyses[J]. NATURE COMMUNICATIONS,2019,10. |
| APA | Liang, Zhenchang.,Duan, Shengchang.,Sheng, Jun.,Zhu, Shusheng.,Ni, Xuemei.,...&Dong, Yang.(2019).Whole-genome resequencing of 472 Vitis accessions for grapevine diversity and demographic history analyses.NATURE COMMUNICATIONS,10. |
| MLA | Liang, Zhenchang,et al."Whole-genome resequencing of 472 Vitis accessions for grapevine diversity and demographic history analyses".NATURE COMMUNICATIONS 10(2019). |
| 条目包含的文件 | ||||||
| 文件名称/大小 | 文献类型 | 版本类型 | 开放类型 | 使用许可 | ||
| Liang-2019-Whole-gen（4282KB） | 期刊论文 | 出版稿 | 开放获取 | CC BY-NC-SA | 浏览 请求全文 | |
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