Knowledge Management System Of Institute Of Botany,CAS
Genome-wide transcriptional adaptation to salt stress in Populus | |
Liu, Jin-Gui; Han, Xiao1; Yang, Tong; Cui, Wen-Hui; Wu, Ai-Min; Fu, Chun-Xiang; Wang, Bai-Chen; Liu, Li-Jun | |
2019 | |
发表期刊 | BMC PLANT BIOLOGY |
ISSN | 1471-2229 |
卷号 | 19期号:1 |
摘要 | Background: Adaptation to abiotic stresses is crucial for the survival of perennial plants in a natural environment. However, very little is known about the underlying mechanisms. Here, we adopted a liquid culture system to investigate plant adaptation to repeated salt stress in Populus trees. Results: We first evaluated phenotypic responses and found that plants exhibit better stress tolerance after pretreatment of salt stress. Time-course RNA sequencing (RNA-seq) was then performed to profile changes in gene expression over 12 h of salt treatments. Analysis of differentially expressed genes (DEGs) indicated that significant transcriptional reprogramming and adaptation to repeated salt treatment occurred. Clustering analysis identified two modules of co-expressed genes that were potentially critical for repeated salt stress adaptation, and one key module for salt stress response in general. Gene Ontology (GO) enrichment analysis identified pathways including hormone signaling, cell wall biosynthesis and modification, negative regulation of growth, and epigenetic regulation to be highly enriched in these gene modules. Conclusions: This study illustrates phenotypic and transcriptional adaptation of Populus trees to salt stress, revealing novel gene modules which are potentially critical for responding and adapting to salt stress. |
关键词 | Abiotic stress Adaptation Perennial plants Populus Gene module |
学科领域 | Plant Sciences |
DOI | 10.1186/s12870-019-1952-2 |
收录类别 | SCI |
语种 | 英语 |
WOS关键词 | SECONDARY GROWTH ; GENE-EXPRESSION ; DROUGHT STRESS ; WOOD FORMATION ; ABSCISIC-ACID ; MEMORY ; TOLERANCE ; CHROMATIN ; OVEREXPRESSION ; GERMINATION |
WOS研究方向 | Plant Sciences |
WOS记录号 | WOS:000483241500001 |
出版者 | BMC |
文献子类 | Article |
出版地 | LONDON |
资助机构 | National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31700583] ; Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm of South China Agricultural University |
作者邮箱 | lijunliu@sdau.edu.cn |
作品OA属性 | Green Published, gold |
引用统计 | |
文献类型 | 期刊论文 |
条目标识符 | http://ir.ibcas.ac.cn/handle/2S10CLM1/19721 |
专题 | 中科院光生物学重点实验室 |
作者单位 | 1.Shandong Agr Univ, Coll Forestry, State Forestry & Grassland Adm, Key Lab Silviculture Downstream Areas Yellow Rive, Tai An 271018, Shandong, Peoples R China 2.Zhejiang A&F Univ, Coll Forestry & Biotechnol, State Key Lab Subtrop Silviculture, Hangzhou 311300, Zhejiang, Peoples R China 3.South China Agr Univ, Coll Forestry & Landscape Architecture, Guangdong Key Lab Innovat Dev & Utilizat Forest P, Guangzhou 510642, Guangdong, Peoples R China 4.Chinese Acad Sci, Qingdao Engn Res Ctr Biomass Resources & Environm, Qingdao Inst Bioenergy & Bioproc Technol, Key Lab Biofuels, Qingdao 266101, Shandong, Peoples R China 5.Chinese Acad Sci, Photosynth Res Ctr, Inst Bot, Key Lab Photobiol, Beijing 100093, Peoples R China |
推荐引用方式 GB/T 7714 | Liu, Jin-Gui,Han, Xiao,Yang, Tong,et al. Genome-wide transcriptional adaptation to salt stress in Populus[J]. BMC PLANT BIOLOGY,2019,19(1). |
APA | Liu, Jin-Gui.,Han, Xiao.,Yang, Tong.,Cui, Wen-Hui.,Wu, Ai-Min.,...&Liu, Li-Jun.(2019).Genome-wide transcriptional adaptation to salt stress in Populus.BMC PLANT BIOLOGY,19(1). |
MLA | Liu, Jin-Gui,et al."Genome-wide transcriptional adaptation to salt stress in Populus".BMC PLANT BIOLOGY 19.1(2019). |
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Liu-2019-Genome-wide(4146KB) | 期刊论文 | 出版稿 | 开放获取 | CC BY-NC-SA | 浏览 请求全文 |
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