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| Resequencing 545 ginkgo genomes across the world reveals the evolutionary history of the living fossil | |
Zhao, Yun-Peng; Fan, Guangyi; Yin, Ping-Ping; Sun, Shuai1; Li, Ning1; Hong, Xiaoning1,4; Hu, Gang1; Zhang, He1; Zhang, Fu-Min; Han, Jing-Dan; Hao, Ya-Jun; Xu, Qiwu1; Yang, Xianwei1; Xia, Wenjie1; Chen, Wenbin5; Lin, Han-Yang; Zhang, Rui1; Chen, Jiang1; Zheng, Xiao-Ming; Lee, Simon Ming-Yuen; Lee, Joongku7; Uehara, Koichi8; Wang, Jian5,9; Yang, Huanming5,9; Fu, Cheng-Xin; Liu, Xin1,10,11; Xu, Xun1; Ge, Song2,3
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| 2019 | |
| Source Publication | NATURE COMMUNICATIONS
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| ISSN | 2041-1723 |
| Volume | 10 |
| Abstract | As Charles Darwin anticipated, living fossils provide excellent opportunities to study evolutionary questions related to extinction, competition, and adaptation. Ginkgo (Ginkgo biloba L.) is one of the oldest living plants and a fascinating example of how people have saved a species from extinction and assisted its resurgence. By resequencing 545 genomes of ginkgo trees sampled from 51 populations across the world, we identify three refugia in China and detect multiple cycles of population expansion and reduction along with glacial admixture between relict populations in the southwestern and southern refugia. We demonstrate multiple anthropogenic introductions of ginkgo from eastern China into different continents. Further analyses reveal bioclimatic variables that have affected the geographic distribution of ginkgo and the role of natural selection in ginkgo's adaptation and resilience. These investigations provide insights into the evolutionary history of ginkgo trees and valuable genomic resources for further addressing various questions involving living fossil species. |
| Subject Area | Multidisciplinary Sciences |
| DOI | 10.1038/s41467-019-12133-5 |
| Indexed By | SCI |
| Language | 英语 |
| WOS Keyword | BILOBA L. GINKGOACEAE ; SELECTIVE SWEEPS ; PHYLOGEOGRAPHY ; DIVERSITY ; CHINA ; CHLOROPLAST ; MITOCHONDRIAL ; SIGNATURES ; INFERENCE ; TREE |
| WOS Research Area | Science & Technology - Other Topics |
| WOS ID | WOS:000485685900040 |
| Publisher | NATURE PUBLISHING GROUP |
| Subtype | Article |
| Publication Place | LONDON |
| Funding Organization | National Key Research and Development Program of China [2016YFE0122000, 2017YFA0605104] ; National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31870190, 31461123001, J1310002] ; Chinese Academy of SciencesChinese Academy of Sciences [XDB31000000, XDB31020000] ; CAS/SAFEA International Partnership Program for Creative Research TeamsChinese Academy of Sciences |
| Corresponding Author Email | cxfu@zju.edu.cn ; liuxin@genomics.cn ; xuxun@genomics.cn ; gesong@ibcas.ac.cn |
| OA | Green Published, gold |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | http://ir.ibcas.ac.cn/handle/2S10CLM1/19882 |
| Collection | 系统与进化植物学国家重点实验室 |
| Affiliation | 1.Zhejiang Univ, Coll Life Sci, Lab Systemat & Evolutionary Bot & Biodivers, Hangzhou 310058, Zhejiang, Peoples R China 2.BGI Shenzhen, BGI Qingdao, Qingdao 266555, Shandong, Peoples R China 3.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China 4.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 5.Univ Chinese Acad Sci, BGI Educ Ctr, Shenzhen 518083, Guangdong, Peoples R China 6.BGI Shenzhen, Shenzhen 518083, Guangdong, Peoples R China 7.Univ Macau, Inst Chinese Med Sci, State Key Lab Qual Res Chinese Med, Macau, Peoples R China 8.Chungnam Natl Univ, Dept Environm & Forest Resources, Daejeon 34134, South Korea 9.Chiba Univ, Coll Liberal Arts & Sci, Chiba 2638522, Japan 10.James D Watson Inst Genome Sci, Hangzhou 310058, Zhejiang, Peoples R China 11.BGI Shenzhen, BGI Fuyang, Fuyang 236009, Anhui, Peoples R China 12.BGI Shenzhen, China Natl GeneBank, Shenzhen 518120, Zhejiang, Peoples R China |
| Recommended Citation GB/T 7714 | Zhao, Yun-Peng,Fan, Guangyi,Yin, Ping-Ping,et al. Resequencing 545 ginkgo genomes across the world reveals the evolutionary history of the living fossil[J]. NATURE COMMUNICATIONS,2019,10. |
| APA | Zhao, Yun-Peng.,Fan, Guangyi.,Yin, Ping-Ping.,Sun, Shuai.,Li, Ning.,...&Ge, Song.(2019).Resequencing 545 ginkgo genomes across the world reveals the evolutionary history of the living fossil.NATURE COMMUNICATIONS,10. |
| MLA | Zhao, Yun-Peng,et al."Resequencing 545 ginkgo genomes across the world reveals the evolutionary history of the living fossil".NATURE COMMUNICATIONS 10(2019). |
| Files in This Item: | ||||||
| File Name/Size | DocType | Version | Access | License | ||
| Zhao-2019-Resequenci（2992KB） | 期刊论文 | 出版稿 | 开放获取 | CC BY-NC-SA | View Application Full Text | |
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