IB-CAS  > 系统与进化植物学国家重点实验室
Resequencing 545 ginkgo genomes across the world reveals the evolutionary history of the living fossil
Zhao, Yun-Peng; Fan, Guangyi; Yin, Ping-Ping; Sun, Shuai1; Li, Ning1; Hong, Xiaoning1,4; Hu, Gang1; Zhang, He1; Zhang, Fu-Min; Han, Jing-Dan; Hao, Ya-Jun; Xu, Qiwu1; Yang, Xianwei1; Xia, Wenjie1; Chen, Wenbin5; Lin, Han-Yang; Zhang, Rui1; Chen, Jiang1; Zheng, Xiao-Ming; Lee, Simon Ming-Yuen; Lee, Joongku7; Uehara, Koichi8; Wang, Jian5,9; Yang, Huanming5,9; Fu, Cheng-Xin; Liu, Xin1,10,11; Xu, Xun1; Ge, Song2,3
2019
发表期刊NATURE COMMUNICATIONS
ISSN2041-1723
卷号10
摘要As Charles Darwin anticipated, living fossils provide excellent opportunities to study evolutionary questions related to extinction, competition, and adaptation. Ginkgo (Ginkgo biloba L.) is one of the oldest living plants and a fascinating example of how people have saved a species from extinction and assisted its resurgence. By resequencing 545 genomes of ginkgo trees sampled from 51 populations across the world, we identify three refugia in China and detect multiple cycles of population expansion and reduction along with glacial admixture between relict populations in the southwestern and southern refugia. We demonstrate multiple anthropogenic introductions of ginkgo from eastern China into different continents. Further analyses reveal bioclimatic variables that have affected the geographic distribution of ginkgo and the role of natural selection in ginkgo's adaptation and resilience. These investigations provide insights into the evolutionary history of ginkgo trees and valuable genomic resources for further addressing various questions involving living fossil species.
学科领域Multidisciplinary Sciences
DOI10.1038/s41467-019-12133-5
收录类别SCI
语种英语
WOS关键词BILOBA L. GINKGOACEAE ; SELECTIVE SWEEPS ; PHYLOGEOGRAPHY ; DIVERSITY ; CHINA ; CHLOROPLAST ; MITOCHONDRIAL ; SIGNATURES ; INFERENCE ; TREE
WOS研究方向Science & Technology - Other Topics
WOS记录号WOS:000485685900040
出版者NATURE PUBLISHING GROUP
文献子类Article
出版地LONDON
资助机构National Key Research and Development Program of China [2016YFE0122000, 2017YFA0605104] ; National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31870190, 31461123001, J1310002] ; Chinese Academy of SciencesChinese Academy of Sciences [XDB31000000, XDB31020000] ; CAS/SAFEA International Partnership Program for Creative Research TeamsChinese Academy of Sciences
作者邮箱cxfu@zju.edu.cn ; liuxin@genomics.cn ; xuxun@genomics.cn ; gesong@ibcas.ac.cn
作品OA属性Green Published, gold
引用统计
被引频次:89[WOS]   [WOS记录]     [WOS相关记录]
文献类型期刊论文
条目标识符http://ir.ibcas.ac.cn/handle/2S10CLM1/19882
专题系统与进化植物学国家重点实验室
作者单位1.Zhejiang Univ, Coll Life Sci, Lab Systemat & Evolutionary Bot & Biodivers, Hangzhou 310058, Zhejiang, Peoples R China
2.BGI Shenzhen, BGI Qingdao, Qingdao 266555, Shandong, Peoples R China
3.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China
4.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
5.Univ Chinese Acad Sci, BGI Educ Ctr, Shenzhen 518083, Guangdong, Peoples R China
6.BGI Shenzhen, Shenzhen 518083, Guangdong, Peoples R China
7.Univ Macau, Inst Chinese Med Sci, State Key Lab Qual Res Chinese Med, Macau, Peoples R China
8.Chungnam Natl Univ, Dept Environm & Forest Resources, Daejeon 34134, South Korea
9.Chiba Univ, Coll Liberal Arts & Sci, Chiba 2638522, Japan
10.James D Watson Inst Genome Sci, Hangzhou 310058, Zhejiang, Peoples R China
11.BGI Shenzhen, BGI Fuyang, Fuyang 236009, Anhui, Peoples R China
12.BGI Shenzhen, China Natl GeneBank, Shenzhen 518120, Zhejiang, Peoples R China
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GB/T 7714
Zhao, Yun-Peng,Fan, Guangyi,Yin, Ping-Ping,et al. Resequencing 545 ginkgo genomes across the world reveals the evolutionary history of the living fossil[J]. NATURE COMMUNICATIONS,2019,10.
APA Zhao, Yun-Peng.,Fan, Guangyi.,Yin, Ping-Ping.,Sun, Shuai.,Li, Ning.,...&Ge, Song.(2019).Resequencing 545 ginkgo genomes across the world reveals the evolutionary history of the living fossil.NATURE COMMUNICATIONS,10.
MLA Zhao, Yun-Peng,et al."Resequencing 545 ginkgo genomes across the world reveals the evolutionary history of the living fossil".NATURE COMMUNICATIONS 10(2019).
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