IB-CAS  > 中科院北方资源植物重点实验室
Plastid phylogenomic study of grape species and its implications for evolutionary study and conservation of Vitis
Mu, Xian-Yun; Shen, Xue-Li; Wu, Yuan-Mi; Zhu, Yi-Xuan; Dong, Shu-Bin; Xia, Xiao-Fei; Lin, Qin-Wen; Fan, Pei-Ge; Liu, Yu-Lin; Zhang, Zhi-Xiang
2018
发表期刊PHYTOTAXA
ISSN1179-3155
卷号364期号:1页码:71-80
摘要Because of rapid diversification and frequent interspecific gene flow within the genus and inappropriate molecular markers used for phylogenetic studies, phylogeny and evolution of the economically significant crop genus Vitis are poorly resolved and understood, and species delimitation of Vitis remain disputable. In order to better understand of relationships within Vitis, phylogenomic analysis of chloroplast genomes were performed based on extensive sampling scheme. Well resolved phylogenetic tree and clear divergence pattern of Vitis were obtained in the present study. The results shows that subg. Vitis was constituted by three strongly supported monophyletic clades whose species are distributed in North America, Europe and Asia, respectively. Nine molecular markers arc provided as potential markers for DNA barcoding and phylogenetic study of Vitis. Furthermore, taxonomic position of the critically endangered species endemic to Northern China, V baihuashanensis, is investigated and suggested to be a separate species based on phylogenomic analysis and morphological comparisons, and effective conservation actions is badly needed. Molecular resources reported in this study could also be used for genetic engineering studies of Vitis, and will potentially promote genomic exploration of crop wild relatives and conservation of the germplasm.
关键词Vitis phylogenomic complete chloroplast genome Vitis baihuashanensis endangered species China
学科领域Plant Sciences
DOI10.11646/phytotaxa.364.1.4
收录类别SCI
语种英语
WOS关键词NONCODING CHLOROPLAST DNA ; GENOME SEQUENCE ; GENUS VITIS ; TORTOISE ; HARE ; ALGORITHM ; REGIONS
WOS记录号WOS:000441000700004
出版者MAGNOLIA PRESS
文献子类Article
出版地AUCKLAND
EISSN1179-3163
资助机构Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31400193] ; Beijing Natural Science FoundationBeijing Natural Science Foundation [5174031] ; Beijing Excellent Talent Project [2016400685627G234] ; [201710022070]
作者邮箱zxzhang@bffu.edu.cn
引用统计
被引频次:3[WOS]   [WOS记录]     [WOS相关记录]
文献类型期刊论文
条目标识符http://ir.ibcas.ac.cn/handle/2S10CLM1/20460
专题中科院北方资源植物重点实验室
作者单位1.[Mu, Xian-Yun
2.Shen, Xue-Li
3.Wu, Yuan-Mi
4.Zhu, Yi-Xuan
5.Beijing Forestry Univ, Coll Nat Conservat, Lab Systemat Evolut & Biogeog Woody Plants, Beijing 100083, Peoples R China
6.Beijing Forestry Univ, Coll Biol Sci & Biotechnol, Beijing 100083, Peoples R China
7.Beijing Museum Nat Hist, Beijing 100050, Peoples R China
8.[Lin, Qin-Wen
9.Chinese Acad Sci, Inst Bot, Beijing 100093, Peoples R China
10.Northwest A&F Univ, Coll Forestry, Yangling 712100, Shaanxi, Peoples R China
推荐引用方式
GB/T 7714
Mu, Xian-Yun,Shen, Xue-Li,Wu, Yuan-Mi,et al. Plastid phylogenomic study of grape species and its implications for evolutionary study and conservation of Vitis[J]. PHYTOTAXA,2018,364(1):71-80.
APA Mu, Xian-Yun.,Shen, Xue-Li.,Wu, Yuan-Mi.,Zhu, Yi-Xuan.,Dong, Shu-Bin.,...&Zhang, Zhi-Xiang.(2018).Plastid phylogenomic study of grape species and its implications for evolutionary study and conservation of Vitis.PHYTOTAXA,364(1),71-80.
MLA Mu, Xian-Yun,et al."Plastid phylogenomic study of grape species and its implications for evolutionary study and conservation of Vitis".PHYTOTAXA 364.1(2018):71-80.
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