Characterization of the GATA gene family in Vitis vinifera: genome-wide analysis, expression profiles, and involvement in light and phytohormone response

doi:10.1139/gen-2018-0042

	Characterization of the GATA gene family in Vitis vinifera: genome-wide analysis, expression profiles, and involvement in light and phytohormone response
	Zhang, Zhan 1,2; Ren, Chong 1,2; Zou, Luming 1,2; Wang, Yi 1,2; Li, Shaohua1 ; Liang, Zhenchang 1,3
	2018
发表期刊	GENOME
ISSN	0831-2796
卷号	61 期号:10 页码:713-723
摘要	The plant GATA family is one of the most important transcription factors involved in light-responsive development, nitrogen metabolism, phytohormone signaling, and source/sink balance. However, the function of the GATA gene is less known in grape (Vitis vinifera L.). In this study, we comprehensively analyzed the GATA family in grape, particularly the phylogenetic evolution, duplication patterns, conserved motifs, gene structures, cis-elements, tissue expression patterns, and predicted function of VvGATA genes in response to abiotic stress. The potential roles of VvGATA genes in berry development were also investigated. The GATA transcription factors displayed expression diversity among different grape organs and tissues, and some of them showed preferential expression in a specific tissue. Heterotrophic cultured cells were used as model systems for the functional characterization of the VvGATA gene and study of its response to light and phytohormone. Results indicated that some VvGATA genes displayed differential responses to light and phytohormones, suggesting their role in light and hormone signaling pathways. A thorough analysis of GATA transcription factors in grape (V. vinifera L) presented the characterization and functional prediction of VvGATA genes. The data presented here lay the foundation for further functional studies of grape GATA transcription factors.
关键词	grape (Vitis vinifera L.) GATA transcription factor evolution expression analysis
学科领域	Biotechnology & Applied Microbiology ; Genetics & Heredity
DOI	10.1139/gen-2018-0042
收录类别	SCI
语种	英语
WOS关键词	TRANSCRIPTION FACTORS GNC ; ZINC-FINGER PROTEIN ; HANABA-TARANU ; SIGNALING PATHWAYS ; FLOWER DEVELOPMENT ; LLM-DOMAIN ; ARABIDOPSIS ; DNA ; METABOLISM ; EVOLUTION
WOS记录号	WOS:000446892400002
出版者	CANADIAN SCIENCE PUBLISHING
文献子类	Article
出版地	OTTAWA
EISSN	1480-3321
资助机构	National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31772266, 31572090] ; Agricultural Breeding Project of Ningxia Hui Autonomous Region [NXNYYZ20150203] ; Hundred Talents of Chinese Academy of Sciences
作者邮箱	zl249@ibcas.ac.cn
作品OA属性	Green Accepted
引用统计	被引频次：26[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.ibcas.ac.cn/handle/2S10CLM1/20463
专题	中科院北方资源植物重点实验室
作者单位	1.Chinese Acad Sci, Beijing Key Lab Grape Sci & Enol, Beijing 100093, Peoples R China 2.Chinese Acad Sci, Inst Bot, CAS Key Lab Plant Resources, Beijing 100093, Peoples R China 3.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 4.Chinese Acad Sci, Sino Africa Joint Res Ctr, Wuhan 430074, Peoples R China
推荐引用方式 GB/T 7714	Zhang, Zhan,Ren, Chong,Zou, Luming,et al. Characterization of the GATA gene family in Vitis vinifera: genome-wide analysis, expression profiles, and involvement in light and phytohormone response[J]. GENOME,2018,61(10):713-723.
APA	Zhang, Zhan,Ren, Chong,Zou, Luming,Wang, Yi,Li, Shaohua,&Liang, Zhenchang.(2018).Characterization of the GATA gene family in Vitis vinifera: genome-wide analysis, expression profiles, and involvement in light and phytohormone response.GENOME,61(10),713-723.
MLA	Zhang, Zhan,et al."Characterization of the GATA gene family in Vitis vinifera: genome-wide analysis, expression profiles, and involvement in light and phytohormone response".GENOME 61.10(2018):713-723.

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