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Coexpression network revealing the plasticity and robustness of population transcriptome during the initial stage of domesticating energy crop Miscanthus lutarioriparius | |
Xing, Shilai4; Tao, Chengcheng1,2,4; Song, Zhihong1,2,4; Liu, Wei1,2; Yan, Juan3; Kang, Lifang1,2; Lin, Cong1,2; Sang, Tao1,2![]() | |
2018 | |
Source Publication | PLANT MOLECULAR BIOLOGY
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ISSN | 0167-4412 |
Volume | 97Issue:6Pages:489-506 |
Abstract | Coexpression network revealing genes with Co-variation Expression pattern (CE) and those with Top rank of Expression fold change (TE) played different roles in responding to new environment of Miscanthus lutarioriparius. Variation in gene expression level, the product of genetic and/or environmental perturbation, determines the robustness-to-plasticity spectrum of a phenotype in plants. Understanding how expression variation of plant population response to a new field is crucial to domesticate energy crops. Weighted Gene Coexpression Network Analysis (WGCNA) was used to explore the patterns of expression variation based on 72 Miscanthus lutarioriparius transcriptomes from two contrasting environments, one near the native habitat and the other in one harsh domesticating region. The 932 genes with Co-variation Expression pattern (CE) and other 932 genes with Top rank of Expression fold change (TE) were identified and the former were strongly associated with the water use efficiency (r ae |
Keyword | Miscanthus lutarioriparius Gene coexpression network Expression variation Genetic diversity Acclimation |
Subject Area | Biochemistry & Molecular Biology ; Plant Sciences |
DOI | 10.1007/s11103-018-0754-5 |
Indexed By | SCI |
Language | 英语 |
WOS Keyword | WATER-USE EFFICIENCY ; GENE-EXPRESSION ; CANDIDATE GENES ; LOESS PLATEAU ; ARABIDOPSIS ; MAIZE ; THALIANA ; TOLERANCE ; EVOLUTION ; SELECTION |
WOS ID | WOS:000442456800002 |
Publisher | SPRINGER |
Subtype | Article |
Publication Place | DORDRECHT |
EISSN | 1573-5028 |
Funding Organization | National Key Research and Development Program of China [2016YFC0500905] ; National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31000147, 31400284] ; Project for Autonomous Deployment of the Wuhan Botanical Garden [55Y755271G02] ; Science and Technology Service Network Initiative of the Chinese Academy of Sciences [KFJ-EW-STS-061] |
Corresponding Author Email | sang@ibcas.ac.cn |
Citation statistics | |
Document Type | 期刊论文 |
Identifier | http://ir.ibcas.ac.cn/handle/2S10CLM1/20511 |
Collection | 系统与进化植物学国家重点实验室 |
Affiliation | 1.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China 2.Chinese Acad Sci, Inst Bot, Key Lab Plant Resources, Beijing 100093, Peoples R China 3.Chinese Acad Sci, Inst Bot, Beijing Bot Garden, Beijing 100093, Peoples R China 4.Chinese Acad Sci, Wuhan Bot Garden, Key Lab Plant Germplasm Enhancement & Specialty A, Wuhan 430074, Hubei, Peoples R China 5.Univ Chinese Acad Sci, Beijing 100049, Peoples R China |
Recommended Citation GB/T 7714 | Xing, Shilai,Tao, Chengcheng,Song, Zhihong,et al. Coexpression network revealing the plasticity and robustness of population transcriptome during the initial stage of domesticating energy crop Miscanthus lutarioriparius[J]. PLANT MOLECULAR BIOLOGY,2018,97(6):489-506. |
APA | Xing, Shilai.,Tao, Chengcheng.,Song, Zhihong.,Liu, Wei.,Yan, Juan.,...&Sang, Tao.(2018).Coexpression network revealing the plasticity and robustness of population transcriptome during the initial stage of domesticating energy crop Miscanthus lutarioriparius.PLANT MOLECULAR BIOLOGY,97(6),489-506. |
MLA | Xing, Shilai,et al."Coexpression network revealing the plasticity and robustness of population transcriptome during the initial stage of domesticating energy crop Miscanthus lutarioriparius".PLANT MOLECULAR BIOLOGY 97.6(2018):489-506. |
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