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Population genetics and evolutionary history of the wild rice species Oryza rufipogon and O-nivara in Sri Lanka | |
Sandamal, Salinda; Tennakoon, Asanka; Meng, Qing-Lin; Marambe, Buddhi2; Ratnasekera, Disna; Melo, Arthur3; Ge, Song1,4 | |
2018 | |
发表期刊 | ECOLOGY AND EVOLUTION |
ISSN | 2045-7758 |
卷号 | 8期号:23页码:12056-12065 |
摘要 | Genetic diversity and population genetic structure of the wild rice species Oryza rufipogon and O. nivara in Sri Lanka were studied using 33 microsatellite markers. A total of 315 individuals of 11 natural populations collected from the wet, intermediate, and dry zones of the country were used in the study. We found a moderate to high level of genetic diversity at the population level, with the polymorphic loci (P) ranging from 60.6% to 100% (average 81.8%) and the expected heterozygosity (H-E) varying from 0.294 to 0.481 (average 0.369). A significant genetic differentiation between species and strong genetic structure within species were also observed. Based on species distribution modeling, we detected the dynamics of the preferred habitats for the two species in Sri Lanka and demonstrated that both O. rufipogon and O. nivara populations have expanded substantially since the last internal glacial. In addition, we showed that the geographical distribution of the two species corresponded to the climate zones and identified a few of key environmental variables that contribute to the distribution of the two species, implying the potential mechanism for ecological adaptation of these two species in Sri Lanka. These studies provided important insights into the population genetics and evolution of these wild species in Sri Lanka and are of great significance to the in situ conservation and utilization of these wild resources in genetic improvement of rice. |
关键词 | evolutionary history O. nivara O. rufipogon population genetics Sri Lanka |
学科领域 | Ecology ; Evolutionary Biology |
DOI | 10.1002/ece3.4665 |
收录类别 | SCI |
语种 | 英语 |
WOS关键词 | PHYLOGENETIC-RELATIONSHIPS ; SATIVA ; DIVERSITY ; DIFFERENTIATION ; ORIGIN ; INTROGRESSION ; DIVERGENCE ; SEQUENCES ; INFERENCE ; RELATIVES |
WOS记录号 | WOS:000454107200058 |
出版者 | WILEY |
文献子类 | Article |
出版地 | HOBOKEN |
资助机构 | National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [91731301, 91231201] ; Chinese Academy of SciencesChinese Academy of Sciences [XDA08020103, XDB31000000] ; National Research Council, Sri Lanka [NRC 15108] ; National Science Foundation, Sri LankaNational Science Foundation (NSF) [OSTP/2016/54, OSTP/2016/53] |
作者邮箱 | gesong@ibcas.ac.cn |
作品OA属性 | gold, Green Published |
引用统计 | |
文献类型 | 期刊论文 |
条目标识符 | http://ir.ibcas.ac.cn/handle/2S10CLM1/20702 |
专题 | 系统与进化植物学国家重点实验室 |
作者单位 | 1.Univ Ruhuna, Dept Agr Biol, Fac Agr, Matara, Sri Lanka 2.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing, Peoples R China 3.Univ Peradeniya, Dept Crop Sci, Fac Agr, Peradeniya, Sri Lanka 4.Univ New Hampshire, Dept Agr Nutr & Food Syst, Durham, NH 03824 USA 5.Univ Chinese Acad Sci, Beijing, Peoples R China |
推荐引用方式 GB/T 7714 | Sandamal, Salinda,Tennakoon, Asanka,Meng, Qing-Lin,et al. Population genetics and evolutionary history of the wild rice species Oryza rufipogon and O-nivara in Sri Lanka[J]. ECOLOGY AND EVOLUTION,2018,8(23):12056-12065. |
APA | Sandamal, Salinda.,Tennakoon, Asanka.,Meng, Qing-Lin.,Marambe, Buddhi.,Ratnasekera, Disna.,...&Ge, Song.(2018).Population genetics and evolutionary history of the wild rice species Oryza rufipogon and O-nivara in Sri Lanka.ECOLOGY AND EVOLUTION,8(23),12056-12065. |
MLA | Sandamal, Salinda,et al."Population genetics and evolutionary history of the wild rice species Oryza rufipogon and O-nivara in Sri Lanka".ECOLOGY AND EVOLUTION 8.23(2018):12056-12065. |
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