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Phylogeny and evolutionary history of Pinaceae updated by transcriptomic analysis | |
Ran, Jin-Hua; Shen, Ting-Ting; Wu, Hui; Gong, Xun1; Wang, Xiao-Quan | |
2018 | |
发表期刊 | MOLECULAR PHYLOGENETICS AND EVOLUTION |
ISSN | 1055-7903 |
卷号 | 129页码:106-116 |
摘要 | Pinaceae comprises 11 genera, and represents the largest family of conifers with an extensive wild distribution in the Northern Hemisphere. Intergeneric relationships of Pinaceae have been investigated using many morphological characters and molecular markers, but phylogenetic positions of four genera, including Cathaya, Cedrus, Nothotsuga and Pseudolarix, remain controversial or have not been completely resolved. To completely resolve the intergeneric relationships of Pinaceae, we conducted a comparative transcriptomic study of 14 species representing all Pinaceae genera. Multiple data sets, containing up to 6,369,681 sites across 4676 loci, were analyzed using concatenation and coalescent methods. Our study generated a robust topology, which divides Pinaceae into two clades, one (pinoid) including Cathaya, Laric, Picea, Pinus, and Pseudotsuga, and the other (abietoid) including Abies, Cedrus, Keteleeria, Nothotsuga, Pseudolarix, and Tsuga. Cathaya and Pinus form a Glade sister to Picea; Cedrus is sister to the remaining abietoid genera, and the two genera Nothotsuga and Tsuga form a Glade sister to Pseudolarix. The discordant positions of Cathaya, Cedrus and Pseudolarix in different gene trees could be explained by ancient radiation and/or molecular homoplastic evolution. The hybrid origin hypothesis of Nothotsuga is not supported. Based on molecular dating, extant Pinaceae genera diverged since about 206 Mya, earlier than the break-up of Pangea, and the divergence among the pinoid genera occurred earlier than the split among the abietoid genera. Moreover, our study indicates that two radiation events occurred in the evolution of Pinaceae genera, and some important morphological characters evolved multiple times based on ancestral state reconstruction. |
关键词 | Phylogenomics Divergence times Convergence Cathaya Cedrus Pinaceae |
学科领域 | Biochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity |
DOI | 10.1016/j.ympev.2018.08.011 |
收录类别 | SCI |
语种 | 英语 |
WOS关键词 | MITOCHONDRIAL SUBSTITUTION RATES ; MOLECULAR PHYLOGENY ; PLANT EVOLUTION ; TREE SELECTION ; GENUS PICEA ; NDH GENES ; FOSSIL ; SEQUENCES ; CONIFERS ; GENOME |
WOS记录号 | WOS:000446023100010 |
出版者 | ACADEMIC PRESS INC ELSEVIER SCIENCE |
文献子类 | Article |
出版地 | SAN DIEGO |
EISSN | 1095-9513 |
资助机构 | Key Research Program of Frontier Sciences, Chinese Academy of Sciences [QYZDJ-SSW-SMC027] ; National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31330008, 31370250, 31770238] ; National Key R&D Program of China [2017YFA0605100] ; Youth Innovation Promotion Association, Chinese Academy of Sciences [2012070] |
作者邮箱 | jinhua_ran@ibcas.ac.cn ; xiaoq_wang@ibcas.ac.cn |
引用统计 | |
文献类型 | 期刊论文 |
条目标识符 | http://ir.ibcas.ac.cn/handle/2S10CLM1/20728 |
专题 | 系统与进化植物学国家重点实验室 |
作者单位 | 1.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, 20 Nanxincun, Beijing 100093, Peoples R China 2.Chinese Acad Sci, Kunming Inst Bot, Key Lab Biodivers & Biogeog, Kunming 650204, Yunnan, Peoples R China 3.Univ Chinese Acad Sci, Beijing 100049, Peoples R China |
推荐引用方式 GB/T 7714 | Ran, Jin-Hua,Shen, Ting-Ting,Wu, Hui,et al. Phylogeny and evolutionary history of Pinaceae updated by transcriptomic analysis[J]. MOLECULAR PHYLOGENETICS AND EVOLUTION,2018,129:106-116. |
APA | Ran, Jin-Hua,Shen, Ting-Ting,Wu, Hui,Gong, Xun,&Wang, Xiao-Quan.(2018).Phylogeny and evolutionary history of Pinaceae updated by transcriptomic analysis.MOLECULAR PHYLOGENETICS AND EVOLUTION,129,106-116. |
MLA | Ran, Jin-Hua,et al."Phylogeny and evolutionary history of Pinaceae updated by transcriptomic analysis".MOLECULAR PHYLOGENETICS AND EVOLUTION 129(2018):106-116. |
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