IB-CAS  > 系统与进化植物学国家重点实验室
Evolutionary and phylogenetic aspects of the chloroplast genome of Chaenomeles species
Sun, Jiahui; Wang, Yiheng; Liu, Yanlei1,2; Xu, Chao1; Yuan, Qingjun; Guo, Lanping; Huang, Luqi
2020
Source PublicationSCIENTIFIC REPORTS
ISSN2045-2322
Volume10Issue:1
AbstractChaenomeles (family Rosaceae) is a genus of five diploid species of deciduous spiny shrubs that are native to Central Asia and Japan. It is an important horticultural crop (commonly known as flowering quinces) in Europe and Asia for its high yield in fruits that are rich in juice, aroma, and dietary fiber. Therefore, the development of effective genetic markers of Chaenomeles species is advantageous for crop improvement through breeding and selection. In this study, we successfully assembled and analyzed the chloroplast genome of five Chaenomeles species. The chloroplast genomes of the five Chaenomeles species were very similar with no structural or content rearrangements among them. The chloroplast genomes ranged from 159,436 to 160,040 bp in length and contained a total of 112 unique genes, including 78 protein-coding genes, 30 tRNAs, and 4 rRNAs. Three highly variable regions, including trnR-atpA, trnL-F, and rpl32-ccsA, were identified. Phylogenetic analysis based on the complete chloroplast genome showed that Chaenomeles forms a monophyletic clade and had a close relationship with the genera Docynia and Malus. Analyses for phylogenetic relationships and the development of available genetic markers in future could provide valuable information regarding genetics and breeding mechanisms of the Chaenomeles species.
Subject AreaMultidisciplinary Sciences
DOI10.1038/s41598-020-67943-1
Indexed BySCI
Language英语
WOS KeywordPLASTID GENOMES ; ROSACEAE ; CLASSIFICATION ; DIVERSITY ; SEQUENCES ; SOFTWARE ; TORTOISE ; REPEATS ; UTILITY ; RAPDS
WOS Research AreaScience & Technology - Other Topics
WOS IDWOS:000548308300005
PublisherNATURE PUBLISHING GROUP
SubtypeArticle
Publication PlaceLONDON
Funding OrganizationFundamental Research Funds for the Central Public Welfare Research Institutes [ZZXT201802]
Corresponding Author Emailyuanqingjun@icmm.ac.cn ; glp01@126.com ; huangluqi01@126.com
OAgold, Green Published
Citation statistics
Cited Times:21[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.ibcas.ac.cn/handle/2S10CLM1/21679
Collection系统与进化植物学国家重点实验室
Affiliation1.China Acad Chinese Med Sci, Natl Resource Ctr Chinese Mat Med, Beijing 100700, Peoples R China
2.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China
3.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
Recommended Citation
GB/T 7714
Sun, Jiahui,Wang, Yiheng,Liu, Yanlei,et al. Evolutionary and phylogenetic aspects of the chloroplast genome of Chaenomeles species[J]. SCIENTIFIC REPORTS,2020,10(1).
APA Sun, Jiahui.,Wang, Yiheng.,Liu, Yanlei.,Xu, Chao.,Yuan, Qingjun.,...&Huang, Luqi.(2020).Evolutionary and phylogenetic aspects of the chloroplast genome of Chaenomeles species.SCIENTIFIC REPORTS,10(1).
MLA Sun, Jiahui,et al."Evolutionary and phylogenetic aspects of the chloroplast genome of Chaenomeles species".SCIENTIFIC REPORTS 10.1(2020).
Files in This Item:
File Name/Size DocType Version Access License
Sun-2020-Evolutionar(5382KB)期刊论文出版稿开放获取CC BY-NC-SAView Application Full Text
Related Services
Recommend this item
Bookmark
Usage statistics
Export to Endnote
Google Scholar
Similar articles in Google Scholar
[Sun, Jiahui]'s Articles
[Wang, Yiheng]'s Articles
[Liu, Yanlei]'s Articles
Baidu academic
Similar articles in Baidu academic
[Sun, Jiahui]'s Articles
[Wang, Yiheng]'s Articles
[Liu, Yanlei]'s Articles
Bing Scholar
Similar articles in Bing Scholar
[Sun, Jiahui]'s Articles
[Wang, Yiheng]'s Articles
[Liu, Yanlei]'s Articles
Terms of Use
No data!
Social Bookmark/Share
File name: Sun-2020-Evolutionary and phylogenetic aspects.pdf
Format: Adobe PDF
This file does not support browsing at this time
All comments (0)
No comment.
 

Items in the repository are protected by copyright, with all rights reserved, unless otherwise indicated.