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Leveraging plastomes for comparative analysis and phylogenomic inference within Scutellarioideae (Lamiaceae)
Zhao, Fei1; Li, Bo2; Drew, Bryan T.; Chen, Ya-Ping; Wang, Qiang4; Yu, Wen-Bin; Liu, En-De; Salmaki, Yasaman6,7; Peng, Hua; Xiang, Chun-Lei
2020
发表期刊PLOS ONE
ISSN1932-6203
卷号15期号:5
摘要Scutellaria, or skullcaps, are medicinally important herbs in China, India, Japan, and elsewhere. Though Scutellaria is the second largest and one of the more taxonomically challenging genera within Lamiaceae, few molecular systematic studies have been undertaken within the genus; in part due to a paucity of available informative markers. The lack of informative molecular markers for Scutellaria hinders our ability to accurately and robustly reconstruct phylogenetic relationships, which hampers our understanding of the diversity, phylogeny, and evolutionary history of this cosmopolitan genus. Comparative analyses of 15 plastomes, representing 14 species of subfamily Scutellarioideae, indicate that plastomes within Scutellarioideae contain about 151,000 nucleotides, and possess a typical quadripartite structure. In total, 590 simple sequence repeats, 489 longer repeats, and 16 hyper-variable regions were identified from the 15 plastomes. Phylogenetic relationships among the 14 species representing four of the five genera of Scutellarioideae were resolved with high support values, but the current infrageneric classification of Scutellaria was not supported in all analyses. Complete plastome sequences provide better resolution at an interspecific level than using few to several plastid markers in phylogenetic reconstruction. The data presented here will serve as a foundation to facilitate DNA barcoding, species identification, and systematic research within Scutellaria, which is an important medicinal plant resource worldwide.
学科领域Multidisciplinary Sciences
DOI10.1371/journal.pone.0232602
收录类别SCI
语种英语
WOS关键词COMPLETE CHLOROPLAST GENOME ; SALVIA LAMIACEAE ; STAMINAL EVOLUTION ; CHARACTER EVOLUTION ; MOLECULAR PHYLOGENY ; GENETIC DIVERSITY ; INVERTED REPEAT ; SEQUENCES ; BIOGEOGRAPHY ; SYSTEMATICS
WOS研究方向Science & Technology - Other Topics
WOS记录号WOS:000537285700045
出版者PUBLIC LIBRARY SCIENCE
文献子类Article
出版地SAN FRANCISCO
资助机构Ten Thousand Talents Program of Yunnan (Top-notch Young Talents) [YNWR-QNBJ-2018-279] ; CAS Light of West China Program ; Excellent Youth Fund Project of Yunnan Provincial Science and Technology Department [2019FI009] ; National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31870181]
作者邮箱hpeng@mail.kib.ac.cn ; xiangchunlei@mail.kib.ac.cn
作品OA属性gold, Green Published
引用统计
被引频次:21[WOS]   [WOS记录]     [WOS相关记录]
文献类型期刊论文
条目标识符http://ir.ibcas.ac.cn/handle/2S10CLM1/21741
专题系统与进化植物学国家重点实验室
作者单位1.Chinese Acad Sci, Kunming Inst Bot, CAS Key Lab Plant Divers & Biogeog East Asia, Kunming, Yunnan, Peoples R China
2.Univ Chinese Acad Sci, Beijing, Peoples R China
3.Jiangxi Agr Univ, Coll Agron, Res Ctr Ecol Sci, Nanchang, Jiangxi, Peoples R China
4.Drew, Bryan T.] Univ Nebraska Kearney, Dept Biol, Kearney, NE USA
5.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing, Peoples R China
6.Chinese Acad Sci, Ctr Integrat Conservat, Xishuangbanna Trop Bot Garden, Mengla, Peoples R China
7.Univ Tehran, Coll Sci, Sch Biol, Ctr Excellence Phylogeny Living Organisms, Tehran, Iran
8.Univ Tehran, Coll Sci, Sch Biol, Dept Plant Sci, Tehran, Iran
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GB/T 7714
Zhao, Fei,Li, Bo,Drew, Bryan T.,et al. Leveraging plastomes for comparative analysis and phylogenomic inference within Scutellarioideae (Lamiaceae)[J]. PLOS ONE,2020,15(5).
APA Zhao, Fei.,Li, Bo.,Drew, Bryan T..,Chen, Ya-Ping.,Wang, Qiang.,...&Xiang, Chun-Lei.(2020).Leveraging plastomes for comparative analysis and phylogenomic inference within Scutellarioideae (Lamiaceae).PLOS ONE,15(5).
MLA Zhao, Fei,et al."Leveraging plastomes for comparative analysis and phylogenomic inference within Scutellarioideae (Lamiaceae)".PLOS ONE 15.5(2020).
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