Grape-RNA: A Database for the Collection, Evaluation, Treatment, and Data Sharing of Grape RNA-Seq Datasets

doi:10.3390/genes11030315

	Grape-RNA: A Database for the Collection, Evaluation, Treatment, and Data Sharing of Grape RNA-Seq Datasets
	Wang, Yi 1,2; Zhang, Rui 3; Liang, Zhenchang 1,4; Li, Shaohua1,2
	2020
发表期刊	GENES
卷号	11 期号:3
摘要	Since its inception, RNA sequencing (RNA-seq) has become the most effective way to study gene expression. After more than a decade of development, numerous RNA-seq datasets have been created, and the full utilization of these datasets has emerged as a major issue. In this study, we built a comprehensive database named Grape-RNA, which is focused on the collection, evaluation, treatment, and data sharing of grape RNA-seq datasets. This database contains 1529 RNA-seq samples, 112 microRNA samples from the public platform, and 485 RNA-seq in-house datasets sequenced by our lab. We classified these data into 25 conditions and provide the sample information, cleaned raw data, expression level, assembled unigenes, useful tools, and other relevant information to the users. Thus, this study provides data and tools that should be beneficial for researchers by allowing them to easily use the RNA-seq. The provided information can greatly contribute to grape breeding and genomic and biological research. This study may improve the usage of RNA-seq.
关键词	Grape-RNA RNA-seq database web tools
学科领域	Genetics & Heredity
DOI	10.3390/genes11030315
收录类别	SCI
语种	英语
WOS关键词	EXPRESSION ; SEQUENCE ; VISUALIZATION ; RESOURCE ; TOMATO ; GENES
WOS研究方向	Genetics & Heredity
WOS记录号	WOS:000529189000079
出版者	MDPI
文献子类	Article
出版地	BASEL
EISSN	2073-4425
资助机构	National Key Research and Development Program of China [2018YFD1000105, 2018YFD1000300] ; Biodiversity Survey and Assessment Project of the Ministry of Ecology and Environment, China [2019HJ2096001006] ; National Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31772266] ; Agricultural Breeding Project of Ningxia Hui Autonomous Region [NXNYYZ20150203]
作者邮箱	wangyi19881107@163.com ; ruizhangly@163.com ; ZL249@ibcas.ac.cn ; shhli@ibcas.ac.cn
作品OA属性	Green Published, gold
引用统计	被引频次：10[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.ibcas.ac.cn/handle/2S10CLM1/21784
专题	中科院北方资源植物重点实验室
作者单位	1.Chinese Acad Sci, Innovat Acad Seed Design, Inst Bot, Beijing Key Lab Grape Sci & Enol, Beijing 100093, Peoples R China 2.Chinese Acad Sci, Innovat Acad Seed Design, Inst Bot, CAS Key Lab Plant Resources, Beijing 100093, Peoples R China 3.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 4.Shandong Agr Univ, Coll Plant Protect, Tai An 271018, Shandong, Peoples R China 5.Chinese Acad Sci, Sino Africa Joint Res Ctr, Wuhan 430074, Peoples R China
推荐引用方式 GB/T 7714	Wang, Yi,Zhang, Rui,Liang, Zhenchang,et al. Grape-RNA: A Database for the Collection, Evaluation, Treatment, and Data Sharing of Grape RNA-Seq Datasets[J]. GENES,2020,11(3).
APA	Wang, Yi,Zhang, Rui,Liang, Zhenchang,&Li, Shaohua.(2020).Grape-RNA: A Database for the Collection, Evaluation, Treatment, and Data Sharing of Grape RNA-Seq Datasets.GENES,11(3).
MLA	Wang, Yi,et al."Grape-RNA: A Database for the Collection, Evaluation, Treatment, and Data Sharing of Grape RNA-Seq Datasets".GENES 11.3(2020).

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