IB-CAS  > 中科院北方资源植物重点实验室
Grape-RNA: A Database for the Collection, Evaluation, Treatment, and Data Sharing of Grape RNA-Seq Datasets
Wang, Yi1,2; Zhang, Rui3; Liang, Zhenchang1,4; Li, Shaohua1,2
2020
Source PublicationGENES
Volume11Issue:3
AbstractSince its inception, RNA sequencing (RNA-seq) has become the most effective way to study gene expression. After more than a decade of development, numerous RNA-seq datasets have been created, and the full utilization of these datasets has emerged as a major issue. In this study, we built a comprehensive database named Grape-RNA, which is focused on the collection, evaluation, treatment, and data sharing of grape RNA-seq datasets. This database contains 1529 RNA-seq samples, 112 microRNA samples from the public platform, and 485 RNA-seq in-house datasets sequenced by our lab. We classified these data into 25 conditions and provide the sample information, cleaned raw data, expression level, assembled unigenes, useful tools, and other relevant information to the users. Thus, this study provides data and tools that should be beneficial for researchers by allowing them to easily use the RNA-seq. The provided information can greatly contribute to grape breeding and genomic and biological research. This study may improve the usage of RNA-seq.
KeywordGrape-RNA RNA-seq database web tools
Subject AreaGenetics & Heredity
DOI10.3390/genes11030315
Indexed BySCI
Language英语
WOS KeywordEXPRESSION ; SEQUENCE ; VISUALIZATION ; RESOURCE ; TOMATO ; GENES
WOS Research AreaGenetics & Heredity
WOS IDWOS:000529189000079
PublisherMDPI
SubtypeArticle
Publication PlaceBASEL
EISSN2073-4425
Funding OrganizationNational Key Research and Development Program of China [2018YFD1000105, 2018YFD1000300] ; Biodiversity Survey and Assessment Project of the Ministry of Ecology and Environment, China [2019HJ2096001006] ; National Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31772266] ; Agricultural Breeding Project of Ningxia Hui Autonomous Region [NXNYYZ20150203]
Corresponding Author Emailwangyi19881107@163.com ; ruizhangly@163.com ; ZL249@ibcas.ac.cn ; shhli@ibcas.ac.cn
OAGreen Published, gold
Citation statistics
Cited Times:7[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.ibcas.ac.cn/handle/2S10CLM1/21784
Collection中科院北方资源植物重点实验室
Affiliation1.Chinese Acad Sci, Innovat Acad Seed Design, Inst Bot, Beijing Key Lab Grape Sci & Enol, Beijing 100093, Peoples R China
2.Chinese Acad Sci, Innovat Acad Seed Design, Inst Bot, CAS Key Lab Plant Resources, Beijing 100093, Peoples R China
3.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
4.Shandong Agr Univ, Coll Plant Protect, Tai An 271018, Shandong, Peoples R China
5.Chinese Acad Sci, Sino Africa Joint Res Ctr, Wuhan 430074, Peoples R China
Recommended Citation
GB/T 7714
Wang, Yi,Zhang, Rui,Liang, Zhenchang,et al. Grape-RNA: A Database for the Collection, Evaluation, Treatment, and Data Sharing of Grape RNA-Seq Datasets[J]. GENES,2020,11(3).
APA Wang, Yi,Zhang, Rui,Liang, Zhenchang,&Li, Shaohua.(2020).Grape-RNA: A Database for the Collection, Evaluation, Treatment, and Data Sharing of Grape RNA-Seq Datasets.GENES,11(3).
MLA Wang, Yi,et al."Grape-RNA: A Database for the Collection, Evaluation, Treatment, and Data Sharing of Grape RNA-Seq Datasets".GENES 11.3(2020).
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