Complete chloroplast genome sequence of the medical fern Drynaria roosii and its phylogenetic analysis

doi:10.1104/pp.17.00202

	Complete chloroplast genome sequence of the medical fern Drynaria roosii and its phylogenetic analysis
	Sun, Meiyu ; Li, Jingrui ; Li, Dong ; Shi, Lei1
	2017
发表期刊	MITOCHONDRIAL DNA PART B-RESOURCES
卷号	2 期号:1 页码:7-8
摘要	In this study, the complete chloroplast genome of the medical fern Drynaria roosii was completed and analyzed in order to understand the evolution of the genome of the fern lineages. In D. roosii, the circular double-stranded cpDNA sequence of 154,305 bp consists of two inverted repeat (IRA and IRB) regions of 23,416 bp each, a large single-copy (LSC) region of 86,040 bp and a small single-copy (SSC) region of 21,433 bp. The overall GC content is 40.92% and the GC contents of LSC, IRs, and SSC are 39.75%, 45.07%, and 36.60%, respectively. D. roosii with 108 annotated unique genes included 85 protein-coding genes, 19 tRNA genes, and 4 rRNA genes. Using the whole chloroplast genome sequences alignment of 18 species from ferns, the phylogenetic relationship was built. The phylogenetic position of D. roosii was closely clustered with Adiantum capillus-veneris, Cheilanthes lindheimeri, and Pteridium aquilium subsp. Aquilinum as sister species and then clustered with Alsophila spinulosa, Lygodium japonicum, Diplopterygium glaucum, and Osmundastrum cinnamomeum. D. roosii belongs to Polypodiales. The complete chloroplast genome of D. roosii provides utility information for ferns evolutionary and genomic studies.
关键词	Chloroplast genome Drynaria roosii de novo sequencing phylogenetic relationship
学科领域	Plant Sciences
DOI	10.1104/pp.17.00202
收录类别	SCI
语种	英语
WOS记录号	WOS:000403152200040
出版者	TAYLOR & FRANCIS LTD
文献子类	Article
出版地	ABINGDON
EISSN	2380-2359
资助机构	National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [81573519]
作者邮箱	shilei@ibcas.ac.cn
作品OA属性	Green Published, Bronze
引用统计	被引频次：37[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.ibcas.ac.cn/handle/2S10CLM1/22232
专题	中科院北方资源植物重点实验室
作者单位	1.Chinese Acad Sci, Key Lab Plant Resources, Inst Bot, Beijing 100093, Peoples R China 2.Chinese Acad Sci, Beijing Bot Garden, Inst Bot, Beijing 100093, Peoples R China
推荐引用方式 GB/T 7714	Sun, Meiyu,Li, Jingrui,Li, Dong,et al. Complete chloroplast genome sequence of the medical fern Drynaria roosii and its phylogenetic analysis[J]. MITOCHONDRIAL DNA PART B-RESOURCES,2017,2(1):7-8.
APA	Sun, Meiyu,Li, Jingrui,Li, Dong,&Shi, Lei.(2017).Complete chloroplast genome sequence of the medical fern Drynaria roosii and its phylogenetic analysis.MITOCHONDRIAL DNA PART B-RESOURCES,2(1),7-8.
MLA	Sun, Meiyu,et al."Complete chloroplast genome sequence of the medical fern Drynaria roosii and its phylogenetic analysis".MITOCHONDRIAL DNA PART B-RESOURCES 2.1(2017):7-8.

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