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| Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch | |
| Salojarvi, Jarkko; Smolander, Olli-Pekka; Nieminen, Kaisa; Rajaraman, Sitaram; Safronov, Omid; Safdari, Pezhman; Lamminmaki, Airi; Immanen, Juha; Lan, Tianying; Tanskanen, Jaakko; Rastas, Pasi5; Amiryousefi, Ali; Jayaprakash, Balamuralikrishna31; Kammonen, Juhana I.; Hagqvist, Risto6; Eswaran, Gugan; Ahonen, Viivi Helena32; Serra, Juan Alonso; Asiegbu, Fred O.; Barajas-Lopez, Juan de Dios; Blande, Daniel; Blokhina, Olga; Blomster, Tiina; Broholm, Suvi; Brosche, Mikael11; Cui, Fuqiang33; Dardick, Chris12; Ehonen, Sanna E.; Elomaa, Paula; Escamez, Sacha13; Fagerstedt, Kurt V.; Fujii, Hiroaki; Gauthier, Adrien34; Gollan, Peter J.; Halimaa, Pauliina; Heino, Pekka I.; Himanen, Kristiina; Hollender, Courtney12; Kangasjarvi, Saijaliisa; Kauppinen, Leila15; Kelleher, Colin T.; Kontunen-Soppela, Sari; Koskinen, J. Patrik; Kovalchuk, Andriy8; Karenlampi, Sirpa O.; Karkonen, Anna K.; Lim, Kean-Jin; Leppala, Johanna; Macpherson, Lee18; Mikola, Juha19; Mouhu, Katriina; Mahonen, Ari Pekka; Niinemets, Ulo20; Oksanen, Elina17; Overmyer, Kirk; Palva, E. Tapio; Pazouki, Leila20; Pennanen, Ville14; Puhakainen, Tuula14,37; Poczai, Peter21; Possen, Boy J. H. M.; Punkkinen, Matleena; Rahikainen, Moona M.; Rousi, Matti22; Ruonala, Raili29,30; van der Schoot, Christiaan23; Shapiguzov, Alexey24; Sierla, Maija; Sipila, Timo P.; Sutela, Suvi25; Teeri, Teemu H.; Tervahauta, Arja I.; Vaattovaara, Aleksia; Vahala, Jorma; Vetchinnikova, Lidia26; Welling, Annikki30,39; Wrzaczek, Michael; Xu, Enjun30,36; Paulin, Lars G.; Schulman, Alan H.; Lascoux, Martin27,28; Albert, Victor A.; Auvinen, Petri2; Helariutta, Yka1,2,29; Kangasjarvi, Jaakko1 | |
| 2017 | |
| Source Publication | NATURE GENETICS
 |
| ISSN | 1061-4036 |
| Volume | 49Issue:6Pages:904+ |
| Abstract | Silver birch (Betula pendula) is a pioneer boreal tree that can be induced to flower within 1 year. Its rapid life cycle, small (440-Mb) genome, and advanced germplasm resources make birch an attractive model for forest biotechnology. We assembled and chromosomally anchored the nuclear genome of an inbred B. pendula individual. Gene duplicates from the paleohexaploid event were enriched for transcriptional regulation, whereas tandem duplicates were overrepresented by environmental responses. Population resequencing of 80 individuals showed effective population size crashes at major points of climatic upheaval. Selective sweeps were enriched among polyploid duplicates encoding key developmental and physiological triggering functions, suggesting that local adaptation has tuned the timing of and cross-talk between fundamental plant processes. Variation around the tightly-linked light response genes PHYC and FRS10 correlated with latitude and longitude and temperature, and with precipitation for PHYC. Similar associations characterized the growth-promoting cytokinin response regulator ARR1, and the wood development genes KAK and MED5A. |
| Subject Area | Plant Sciences |
| DOI | 10.3389/fpls.2017.01328 |
| Indexed By | SCI |
| Language | 英语 |
| WOS Keyword | TRANSCRIPTION FACTOR ; FLOWERING TIME ; PHYTOCHROME-C ; ARABIDOPSIS ; CYTOKININ ; SIZE ; GROWTH ; AUXIN ; EVOLUTION ; HYBRIDIZATION |
| WOS ID | WOS:000406852500002 |
| Publisher | NATURE PUBLISHING GROUP |
| Subtype | Article |
| Publication Place | NEW YORK |
| EISSN | 1546-1718 |
| Funding Organization | Finnish Technology Development Agency (TEKES) grant ; Finnish Centre of Excellence in Molecular Biology of Primary Producers (Academy of Finland CoE program) [271832] ; Gatsby Foundation ; European Research Council Advanced Investigator Grant SYMDEV ; US National Science foundationNational Science Foundation (NSF) [0922742, 1442190] ; University of Helsinki ; TEKESFinnish Funding Agency for Technology & Innovation (TEKES) ; Direct For Biological SciencesNational Science Foundation (NSF)NSF - Directorate for Biological Sciences (BIO) [1442190] Funding Source: National Science Foundation |
| Corresponding Author Email | vaalbert@buffalo.edu ; petri.auvinen@helsinki.fi ; yrjo.helariutta@helsinki.fi ; jaakko.kangasjarvi@helsinki.fi |
| OA | gold, Green Published |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | http://ir.ibcas.ac.cn/handle/2S10CLM1/22251 |
| Collection | 中科院植物分子生理学重点实验室 |
| Affiliation | 1.Univ Helsinki, Dept Biosci, Div Plant Biol, Helsinki, Finland 2.Univ Helsinki, Viikki Plant Sci Ctr, Helsinki, Finland 3.Univ Helsinki, Inst Biotechnol, Helsinki, Finland 4.Nieminen, Kaisa; Tanskanen, Jaakko; Karkonen, Anna K.; Schulman, Alan H.] Nat Resources Inst Finland Luke, Green Technol, Helsinki, Finland 5.Lan, Tianying; Albert, Victor A.] Univ Buffalo, Dept Biol Sci, Buffalo, NY USA 6.Univ Cambridge, Dept Zool, Cambridge, England 7.Nat Resources Inst Finland Luke, Green Technol, Haapastensyrja, Layliainen, Finland 8.Ahonen, Viivi Helena; Blande, Daniel; Karenlampi, Sirpa O.; Tervahauta, Arja I.] Univ Eastern Finland, Dept Environm & Biol Sci, Kuopio, Finland 9.Univ Helsinki, Dept Forest Sci, Helsinki, Finland 10.Fujii, Hiroaki; Gollan, Peter J.; Kangasjarvi, Saijaliisa; Punkkinen, Matleena; Rahikainen, Moona M.] Univ Turku, Dept Biochem, Mol Plant Biol, Turku, Finland 11.Broholm, Suvi; Elomaa, Paula; Himanen, Kristiina; Karkonen, Anna K.; Lim, Kean-Jin; Mouhu, Katriina; Teeri, Teemu H.] Univ Helsinki, Dept Agr Sci, Helsinki, Finland 12.Univ Tartu, Inst Technol, Tartu, Estonia 13.USDA, Appalachian Fruit Res Stn, Agr Res Serv, Kearnysville, WV USA 14.Umea Univ, Dept Plant Physiol, Umea Plant Sci Ctr, Umea, Sweden 15.Univ Helsinki, Dept Biosci, Div Genet, Helsinki, Finland 16.Univ Helsinki, Dept Biosci, Helsinki, Finland 17.Kelleher, Colin T.] Natl Bot Gardens Ireland, DBN Plant Mol Lab, Dublin, Ireland 18.Univ Eastern Finland, Dept Environm & Biol Sci, Joensuu, Finland 19.Kings Coll London, Dept Haemato Oncol, London, England 20.Univ Helsinki, Dept Environm Sci, Helsinki, Finland 21.Estonian Univ Life Sci, Inst Agr & Environm Sci, Tartu, Estonia 22.Univ Helsinki, Finnish Museum Nat Hist Botany, Helsinki, Finland 23.Nat Resources Inst Finland Luke, Management & Prod Renewable Resources, Helsinki, Finland 24.Norwegian Univ Life Sci, Dept Plant Sci, As, Norway 25.Russian Acad Sci, Inst Plant Physiol, Moscow, Russia 26.Univ Oulu, Genet & Physiol Unit, Oulu, Finland 27.Russian Acad Sci, Karelian Res Ctr, Forest Res Inst, Petrozavodsk, Russia 28.Uppsala Univ, Dept Ecol & Genet, Evolutionary Biol Ctr, Uppsala, Sweden 29.Uppsala Univ, Sci Life Lab, Uppsala, Sweden 30.Univ Cambridge, Sainsbury Lab, Cambridge, England 31.Univ Helsinki, Dept Biosci, Ecol Genet Res Unit, Helsinki, Finland 32.Natl Inst Hlth & Welf THL, Kuopio, Finland 33.Work Environm Labs, Finnish Inst Occupat Hlth, Kuopio, Finland 34.Zhejiang Agr & Forestry Univ, Sch Forest Biotechnol, Hangzhou, Zhejiang, Peoples R China 35.UniLaSalle, Unite AGRI TERR, Campus Rouen, Mont St Aignan, France 36.Blueprint Genet, Helsinki, Finland 37.Chinese Acad Sci, Inst Bot, Beijing, Peoples R China 38.Sci Agr Soc Finland, Agr & Food Sci, Lemu, Finland 39.Possen, Boy J. H. M.] Royal Haskoning DHV, Maastricht Airport, Beek, Netherlands 40.Finnish Food Safety Author Evira, Chem & Toxicol Res Unit, Helsinki, Finland |
| Recommended Citation GB/T 7714 | Salojarvi, Jarkko,Smolander, Olli-Pekka,Nieminen, Kaisa,et al. Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch[J]. NATURE GENETICS,2017,49(6):904+. |
| APA | Salojarvi, Jarkko.,Smolander, Olli-Pekka.,Nieminen, Kaisa.,Rajaraman, Sitaram.,Safronov, Omid.,...&Kangasjarvi, Jaakko.(2017).Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch.NATURE GENETICS,49(6),904+. |
| MLA | Salojarvi, Jarkko,et al."Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch".NATURE GENETICS 49.6(2017):904+. |
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| 28824666.pdf（7504KB） | 期刊论文 | 出版稿 | 开放获取 | CC BY-NC-SA | View Application Full Text | |
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