The complete chloroplast genome sequences of Lychnis wilfordii and Silene capitata and comparative analyses with other Caryophyllaceae genomes

doi:10.1016/j.biocon.2016.04.022

	The complete chloroplast genome sequences of Lychnis wilfordii and Silene capitata and comparative analyses with other Caryophyllaceae genomes
	Kang, Jong-Soo ; Lee, Byoung Yoon ; Kwak, Myounghai 2
	2017
发表期刊	PLOS ONE
ISSN	1932-6203
卷号	12 期号:2
摘要	The complete chloroplast genomes of Lychnis wilfordii and Silene capitata were determined and compared with ten previously reported Caryophyllaceae chloroplast genomes. The chloroplast genome sequences of L. wilfordii and S. capitata contain 152,320 bp and 150,224 bp, respectively. The gene contents and orders among 12 Caryophyllaceae species are consistent, but several microstructural changes have occurred. Expansion of the inverted repeat (IR) regions at the large single copy (LSC)/IRb and small single copy (SSC)/IR boundaries led to partial or entire gene duplications. Additionally, rearrangements of the LSC region were caused by gene inversions and/or transpositions. The 18 kb inversions, which occurred three times in different lineages of tribe Sileneae, were thought to be facilitated by the intermolecular duplicated sequences. Sequence analyses of the L. wilfordii and S. capitata genomes revealed 39 and 43 repeats, respectively, including forward, palindromic, and reverse repeats. In addition, a total of 67 and 56 simple sequence repeats were discovered in the L. wilfordii and S. capitata chloroplast genomes, respectively. Finally, we constructed phylogenetic trees of the 12 Caryophyllaceae species and two Amaranthaceae species based on 73 protein-coding genes using both maximum parsimony and likelihood methods.
学科领域	Biodiversity & Conservation ; Environmental Sciences & Ecology
DOI	10.1016/j.biocon.2016.04.022
收录类别	SCI
语种	英语
WOS关键词	COMPLETE NUCLEOTIDE-SEQUENCE ; PLASTID GENOMES ; EVOLUTION ; MITOCHONDRIAL ; ANGIOSPERMS ; PLANTS ; REPEAT ; FAMILY ; CLASSIFICATION ; REARRANGEMENTS
WOS记录号	WOS:000404709100009
出版者	PUBLIC LIBRARY SCIENCE
文献子类	Article
出版地	SAN FRANCISCO
资助机构	National Institute of Biological Resources (NIBR) - Ministry of Environment of the Republic of Korea [NIBR201503102]
作者邮箱	mhkwak1@korea.kr
引用统计	被引频次：26[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.ibcas.ac.cn/handle/2S10CLM1/22300
专题	系统与进化植物学国家重点实验室
作者单位	1.[Kang, Jong-Soo 2.Lee, Byoung Yoon 3.Natl Inst Biol Resources, Plant Resources Div, Incheon, South Korea 4.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing, Peoples R China 5.Univ Chinese Acad Sci, Beijing, Peoples R China
推荐引用方式 GB/T 7714	Kang, Jong-Soo,Lee, Byoung Yoon,Kwak, Myounghai. The complete chloroplast genome sequences of Lychnis wilfordii and Silene capitata and comparative analyses with other Caryophyllaceae genomes[J]. PLOS ONE,2017,12(2).
APA	Kang, Jong-Soo,Lee, Byoung Yoon,&Kwak, Myounghai.(2017).The complete chloroplast genome sequences of Lychnis wilfordii and Silene capitata and comparative analyses with other Caryophyllaceae genomes.PLOS ONE,12(2).
MLA	Kang, Jong-Soo,et al."The complete chloroplast genome sequences of Lychnis wilfordii and Silene capitata and comparative analyses with other Caryophyllaceae genomes".PLOS ONE 12.2(2017).

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