Knowledge Management System Of Institute Of Botany,CAS
| Comparative Analysis of Six Lagerstroemia Complete Chloroplast Genomes | |
| Xu, Chao1; Dong, Wenpan2; Li, Wenqing3; Lu, Yizeng3; Xie, Xiaoman3; Jin, Xiaobai4; Shi, Jipu5; He, Kaihong5; Suo, Zhili | |
| 2017 | |
| 发表期刊 | FRONTIERS IN PLANT SCIENCE
 |
| ISSN | 1664-462X |
| 卷号 | 8 |
| 摘要 | Crape myrtles are economically important ornamental trees of the genus Lagerstroemia L. (Lythraceae), with a distribution from tropical to northern temperate zones. They are positioned phylogenetically to a large subclade of rosids (in the eudicots) which contain more than 25% of all the angiosperms. They commonly bloom from summer till fall and are of significant value in city landscape and environmental protection. Morphological traits are shared inter-specifically among plants of Lagerstroemia to certain extent and are also influenced by environmental conditions and different developmental stages. Thus, classification of plants in Lagerstroemia at species and cultivar levels is still a challenging task. Chloroplast (cp) genome sequences have been proven to be an informative and valuable source of cp DNA markers for genetic diversity evaluation. In this study, the complete cp genomes of three Lagerstroemia species were newly sequenced, and three other published cp genome sequences of Lagerstroemia were retrieved for comparative analyses in order to obtain an upgraded understanding of the application value of genetic information from the cp genomes. The six cp genomes ranged from 152,049 bp (L. subcostata) to 152,526 bp (L. speciosa) in length. We analyzed nucleotide substitutions, insertions/deletions, and simple sequence repeats in the cp genomes, and discovered 12 relatively highly variable regions that will potentially provide plastid markers for further taxonomic, phylogenetic, and population genetics studies in Lagerstroemia. The phylogenetic relationships of the Lagerstroemia taxa inferred from the datasets from the cp genomes obtained high support, indicating that cp genome data may be useful in resolving relationships in this genus. |
| 关键词 | Lagerstroemia chloroplast genome comparative genomics simple repeat sequence sequence divergence plastid marker phylogeny |
| 学科领域 | Biodiversity & Conservation ; Environmental Sciences & Ecology |
| DOI | 10.1016/j.gecco.2017.02.004 |
| 收录类别 | SCI |
| 语种 | 英语 |
| WOS关键词 | PLASTID GENOMES ; PHYLOGENETIC ANALYSIS ; SUBSTITUTION BIAS ; GENETIC DIVERSITY ; DNA ; MARKERS ; REPEAT ; CULTIVARS ; SOFTWARE ; REGIONS |
| WOS记录号 | WOS:000413278400013 |
| 出版者 | FRONTIERS MEDIA SA |
| 文献子类 | Article |
| 出版地 | LAUSANNE |
| 资助机构 | Collection, Conservation, and Evaluation of Forest Tree Germplasm Resources of Shandong Provincial Agricultural Elite Varieties Project [LKZ201496-1-3] ; National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [30972412] ; National Forest Genetic Resources Platform [2005DKA21003] ; [70009C1036] ; [70009C1020] |
| 作者邮箱 | zlsuo@ibcas.ac.cn |
| 作品OA属性 | gold |
| 引用统计 | |
| 文献类型 | 期刊论文 |
| 条目标识符 | http://ir.ibcas.ac.cn/handle/2S10CLM1/22304 |
| 专题 | 系统与进化植物学国家重点实验室 |
| 作者单位 | 1.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing, Peoples R China 2.Univ Chinese Acad Sci, Beijing, Peoples R China 3.Peking Univ, Peking Tsinghua Ctr Life Sci, Acad Adv Interdisciplinary Studies, Beijing, Peoples R China 4.Shandong Prov Ctr Forest Tree Germplasm Resources, Jinan, Peoples R China 5.Chinese Acad Sci, Inst Bot, Beijing Bot Garden, Beijing, Peoples R China 6.Chinese Acad Sci, Xishuangbanna Trop Bot Garden, Mengla, Peoples R China |
| 推荐引用方式 GB/T 7714 | Xu, Chao,Dong, Wenpan,Li, Wenqing,et al. Comparative Analysis of Six Lagerstroemia Complete Chloroplast Genomes[J]. FRONTIERS IN PLANT SCIENCE,2017,8. |
| APA | Xu, Chao.,Dong, Wenpan.,Li, Wenqing.,Lu, Yizeng.,Xie, Xiaoman.,...&Suo, Zhili.(2017).Comparative Analysis of Six Lagerstroemia Complete Chloroplast Genomes.FRONTIERS IN PLANT SCIENCE,8. |
| MLA | Xu, Chao,et al."Comparative Analysis of Six Lagerstroemia Complete Chloroplast Genomes".FRONTIERS IN PLANT SCIENCE 8(2017). |
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