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| The Dendrobium catenatum Lindl. genome sequence provides insights into polysaccharide synthase, floral development and adaptive evolution | |
Zhang, Guo-Qiang; Xu, Qing; Bian, Chao3; Tsai, Wen-Chieh; Yeh, Chuan-Ming; Liu, Ke-Wei; Yoshida, Kouki9; Zhang, Liang-Sheng; Chang, Song-Bin; Chen, Fei11; Shi, Yu; Su, Yong-Yu; Zhang, Yong-Qiang; Chen, Li-Jun; Yin, Yayi; Lin, Min; Huang, Huixia; Deng, Hua13; Wang, Zhi-Wen; Zhu, Shi-Lin; Zhao, Xiang14; Deng, Cao14; Niu, Shan-Ce; Huang, Jie; Wang, Meina; Liu, Guo-Hui; Yang, Hai-Jun; Xiao, Xin-Ju; Hsiao, Yu-Yun; Wu, Wan-Lin; Chen, You-Yi; Mitsuda, Nobutaka; Ohme-Takagi, Masaru; Luo, Yi-Bo ; Van de Peer, Yves16,17,18,19; Liu, Zhong-Jian
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| 2016 | |
| Source Publication | SCIENTIFIC REPORTS
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| ISSN | 2045-2322 |
| Volume | 6 |
| Abstract | Orchids make up about 10% of all seed plant species, have great economical value, and are of specific scientific interest because of their renowned flowers and ecological adaptations. Here, we report the first draft genome sequence of a lithophytic orchid, Dendrobium catenatum. We predict 28,910 protein-coding genes, and find evidence of a whole genome duplication shared with Phalaenopsis. We observed the expansion of many resistance-related genes, suggesting a powerful immune system responsible for adaptation to a wide range of ecological niches. We also discovered extensive duplication of genes involved in glucomannan synthase activities, likely related to the synthesis of medicinal polysaccharides. Expansion of MADS-box gene clades ANR1, StMADS11, and MIKC*, involved in the regulation of development and growth, suggests that these expansions are associated with the astonishing diversity of plant architecture in the genus Dendrobium. On the contrary, members of the type I MADS box gene family are missing, which might explain the loss of the endospermous seed. The findings reported here will be important for future studies into polysaccharide synthesis, adaptations to diverse environments and flower architecture of Orchidaceae. |
| Subject Area | Multidisciplinary Sciences |
| DOI | 10.1038/srep19029 |
| Indexed By | SCI |
| Language | 英语 |
| WOS Keyword | MADS-BOX GENE ; STRESS TOLERANCE ; MANNAN SYNTHASE ; ABIOTIC STRESS ; WIDE ANALYSIS ; ARABIDOPSIS ; FAMILY ; METABOLISM ; SIZE ; TOOL |
| WOS Research Area | Science Citation Index Expanded (SCI-EXPANDED) |
| WOS ID | WOS:000368108300003 |
| Publisher | NATURE PORTFOLIO |
| Subtype | Article |
| Publication Place | BERLIN |
| Funding Organization | 948 programme from the State Forestry Administration P. R. China [2011-4-53] ; Funds for Forestry Science and Technology Innovation Project of Guangdong, China [2011KJCX009, 2013KJCX014-05] ; Funds for Environmental Project of Shenzhen, China [2013-02] ; Funds for Technology Research and Development Project of Shenzhen, China [CXZZ20120830103025851] ; Funds for the Development of Strategic Emerging Industries of Shenzhen, China [NY20130205008] ; European Union under European Research Council [322739-DOUBLE-UP] |
| Corresponding Author Email | luoyb@ibcas.ac.cn ; yves.vandepeer@psb.vib-ugent.be ; liuzj@sinicaorchid.org |
| OA | Green Published, gold |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | http://ir.ibcas.ac.cn/handle/2S10CLM1/25001 |
| Collection | 系统与进化植物学国家重点实验室 |
| Affiliation | 1.Natl Orchid Conservat Ctr China, Shenzhen Key Lab Orchid Conservat & Utilizat, Shenzhen 518114, Peoples R China 2.Orchid Conservat & Res Ctr Shenzhen, Shenzhen 518114, Peoples R China 3.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China 4.State Key Lab Agr Genom, Shenzhen Key Lab Marine Genom, Shenzhen 518083, Peoples R China 5.Natl Cheng Kung Univ, Dapt Life Sci, Tainan 701, Taiwan 6.Natl Cheng Kung Univ, Orchid Res Ctr, Tainan 701, Taiwan 7.Natl Cheng Kung Univ, Inst Trop Plant Sci, Tainan 701, Taiwan 8.Saitama Univ, Grad Sch Sci & Engn, Saitama 3388570, Japan 9.Tsinghua Univ, Grad Sch Shenzhen, Ctr Biotechnol & BioMed, Shenzhen 518055, Peoples R China 10.Taisei Corp, Technol Ctr, Taiseio, Kanagawa 2450051, Japan 11.Fujian Agr & Forestry Univ, Haixia Inst Sci & Technol, Fuzhou 350002, Peoples R China 12.Nanjing Agr Univ, Coll Hort, Fruit Crop Syst Biol Lab, Nanjing 210095, Jiangsu, Peoples R China 13.South China Agr Univ, Coll Forestry, Guangzhou 510640, Peoples R China 14.Chinese Acad Forestry, Beijing 100093, Peoples R China 15.PubBiotech Serv Corp, Wuhan 430070, Peoples R China 16.Natl Inst Adv Ind Sci & Technol, Bioprod Res Inst, Tsukuba, Ibaraki 3058562, Japan 17.Univ Ghent, Dept Plant Syst Biol, VIB, B-9000 Ghent, Belgium 18.Univ Ghent, Dept Plant Biotechnol & Bioinformat, B-9000 Ghent, Belgium 19.Univ Ghent, Bioinformat Inst Ghent, B-9000 Ghent, Belgium 20.Genom Res Inst, Dept Genet, Pretoria, South Africa |
| Recommended Citation GB/T 7714 | Zhang, Guo-Qiang,Xu, Qing,Bian, Chao,et al. The Dendrobium catenatum Lindl. genome sequence provides insights into polysaccharide synthase, floral development and adaptive evolution[J]. SCIENTIFIC REPORTS,2016,6. |
| APA | Zhang, Guo-Qiang.,Xu, Qing.,Bian, Chao.,Tsai, Wen-Chieh.,Yeh, Chuan-Ming.,...&Liu, Zhong-Jian.(2016).The Dendrobium catenatum Lindl. genome sequence provides insights into polysaccharide synthase, floral development and adaptive evolution.SCIENTIFIC REPORTS,6. |
| MLA | Zhang, Guo-Qiang,et al."The Dendrobium catenatum Lindl. genome sequence provides insights into polysaccharide synthase, floral development and adaptive evolution".SCIENTIFIC REPORTS 6(2016). |
| Files in This Item: | ||||||
| File Name/Size | DocType | Version | Access | License | ||
| Zhang-2016-The Dendr（1922KB） | 期刊论文 | 出版稿 | 开放获取 | CC BY-NC-SA | View Application Full Text | |
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