IB-CAS  > 系统与进化植物学国家重点实验室
Tree of life for the genera of Chinese vascular plants
Chen, Zhi-Duan; Yang, Tuo; Lin, Li; Lu, Li-Min; Li, Hong-Lei; Sun, Miao; Liu, Bing; Chen, Min; Niu, Yan-Ting; Ye, Jian-Fei; Cao, Zhi-Yong; Liu, Hong-Mei; Wang, Xiao-Ming; Wang, Wei; Zhang, Jing-Bo; Meng, Zhen; Cao, Wei; Li, Jian-Hui; Wu, Sheng-Dan; Zhao, Hui-Ling; Liu, Zhong-Jian; Du, Zhi-Yuan; Wang, Qing-Feng; Guo, Jing; Tan, Xin-Xin; Su, Jun-Xia; Zhang, Lin-Jing; Yang, Lei-Lei; Liao, Yi-Ying; Li, Ming-He; Zhang, Guo-Qiang; Chung, Shih-Wen; Zhang, Jian; Xiang, Kun-Li; Li, Rui-Qi; Soltis, Douglas E.; Soltis, Pamela S.; Zhou, Shi-Liang; Ran, Jin-Hua; Wang, Xiao-Quan; Jin, Xiao-Hua; Chen, You-Sheng; Gao, Tian-Gang; Li, Jian-Hua; Zhang, Shou-Zhou; Lu, An-Ming
2016
Source PublicationJOURNAL OF SYSTEMATICS AND EVOLUTION
ISSN1674-4918
Volume54Issue:4Pages:277-306
AbstractWe reconstructed a phylogenetic tree of Chinese vascular plants (Tracheophyta) using sequences of the chloroplast genes atpB, matK, ndhF, and rbcL and mitochondrial matR. We produced a matrix comprising 6098 species and including 13 695 DNA sequences, of which 1803 were newly generated. Our taxonomic sampling spanned 3114 genera representing 323 families of Chinese vascular plants, covering more than 93% of all genera known from China. The comprehensive large phylogeny supports most relationships among and within families recognized by recent molecular phylogenetic studies for lycophytes, ferns (monilophytes), gymnosperms, and angiosperms. For angiosperms, most families in Angiosperm Phylogeny Group IV are supported as monophyletic, except for a paraphyletic Dipterocarpaceae and Santalaceae. The infrafamilial relationships of several large families and monophyly of some large genera are well supported by our dense taxonomic sampling. Our results showed that two species of Eberhardtia are sister to a clade formed by all other taxa of Sapotaceae, except Sarcosperma. We have made our phylogeny of Chinese vascular plants publically available for the creation of subtrees via SoTree (http://www.darwintree.cn/flora/index.shtml), an automated phylogeny assembly tool for ecologists.
KeywordChina DarwinTree megaphylogeny regional tree of life SoTree vascular plants
Subject AreaPlant Sciences
DOI10.1111/jse.12219
Indexed BySCI
Language英语
WOS KeywordSEED PLANTS ; EXTANT GYMNOSPERMS ; NUCLEOTIDE-SEQUENCES ; MOLECULAR PHYLOGENY ; DNA-SEQUENCES ; NUCLEAR GENES ; DATA SETS ; CHLOROPLAST ; EVOLUTION ; MITOCHONDRIAL
WOS Research AreaScience Citation Index Expanded (SCI-EXPANDED)
WOS IDWOS:000383771900002
PublisherWILEY
Special IssueSI
SubtypeArticle
Publication PlaceHOBOKEN
EISSN1759-6831
Funding OrganizationNational Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31590822] ; National Key Basic Research Program of ChinaNational Basic Research Program of China [2014CB954100, 31270268, 31270269] ; Chinese Academy of Sciences International Institution Development Program [SAJC201315] ; Shenzhen Science and Technology Innovation Council Funding [KQC 201105310009A] ; Science and Technology Basic Work [2013FY112100] ; Chinese Academy of Sciences External Cooperation Program of BIC [GJHZ201321] ; Chinese Academy of Sciences Visiting Professorship for Senior International Scientists [2011T1S24] ; US National Science Foundation for Open tree [DEB-1208428] ; iDigBio [EF-1115210] ; Direct For Biological SciencesNational Science Foundation (NSF)NSF - Directorate for Biological Sciences (BIO) [1115210, 1208428] Funding Source: National Science Foundation ; Div Of Biological InfrastructureNational Science Foundation (NSF)NSF - Directorate for Biological Sciences (BIO) [1547229] Funding Source: National Science Foundation
Corresponding Author Emailzhiduan@ibcas.ac.cn ; szzhang@126.com ; anmin@ibcas.ac.cn
OABronze
Citation statistics
Document Type期刊论文
Identifierhttp://ir.ibcas.ac.cn/handle/2S10CLM1/25007
Collection系统与进化植物学国家重点实验室
Affiliation1.[Chen, Zhi-Duan
2.Yang, Tuo
3.Lin, Li
4.Lu, Li-Min
5.Li, Hong-Lei
6.Sun, Miao
7.Liu, Bing
8.Chen, Min
9.Niu, Yan-Ting
10.Ye, Jian-Fei
11.Cao, Zhi-Yong
12.Wang, Wei
13.Zhang, Jing-Bo
14.Zhang, Jian
15.Xiang, Kun-Li
16.Li, Rui-Qi
17.Zhou, Shi-Liang
18.Ran, Jin-Hua
19.Wang, Xiao-Quan
20.Jin, Xiao-Hua
21.Chen, You-Sheng
22.Gao, Tian-Gang
23.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China
24.[Li, Hong-Lei
25.Liu, Hong-Mei
26.Wang, Xiao-Ming
27.Yang, Lei-Lei
28.Liao, Yi-Ying
29.Fairylake Bot Garden, Shenzhen Key Lab Southern Subtrop Plant Divers, Shenzhen, Peoples R China
30.Chinese Acad Sci, Shenzhen 518004, Peoples R China
31.[Meng, Zhen
32.Cao, Wei
33.Chinese Acad Sci, Comp Network Informat Ctr, Beijing 100190, Peoples R China
34.[Wu, Sheng-Dan
35.Zhao, Hui-Ling
36.Guo, Jing
37.Tan, Xin-Xin
38.Su, Jun-Xia
39.Shanxi Normal Univ, Coll Life Sci, Linfen 041004, Peoples R China
40.[Liu, Zhong-Jian
41.Li, Ming-He
42.Orchid Conservat & Res Ctr Shenzhen, Shenzhen 518114, Peoples R China
43.[Du, Zhi-Yuan
44.Chinese Acad Sci, Wuhan Bot Garden, Wuhan 430074, Peoples R China
45.Taiwan Forestry Res Inst, Dept Bot, 20 Nan Hai Rd, Taipei 100, Peoples R China
46.[Soltis, Douglas E.] Univ Florida, Dept Biol, Gainesville, FL 32611 USA
47.[Soltis, Douglas E.
48.Soltis, Pamela S.] Univ Florida, Florida Museum Nat Hist, Gainesville, FL 32611 USA
49.Soltis, Pamela S.] Univ Florida, Genet Inst, Gainesville, FL 32610 USA
50.Hope Coll, Dept Biol, Holland, MI 49423 USA
51.[Yang, Tuo
52.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
Recommended Citation
GB/T 7714
Chen, Zhi-Duan,Yang, Tuo,Lin, Li,et al. Tree of life for the genera of Chinese vascular plants[J]. JOURNAL OF SYSTEMATICS AND EVOLUTION,2016,54(4):277-306.
APA Chen, Zhi-Duan.,Yang, Tuo.,Lin, Li.,Lu, Li-Min.,Li, Hong-Lei.,...&Lu, An-Ming.(2016).Tree of life for the genera of Chinese vascular plants.JOURNAL OF SYSTEMATICS AND EVOLUTION,54(4),277-306.
MLA Chen, Zhi-Duan,et al."Tree of life for the genera of Chinese vascular plants".JOURNAL OF SYSTEMATICS AND EVOLUTION 54.4(2016):277-306.
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