Tree of life for the genera of Chinese vascular plants

doi:10.1111/jse.12219

	Tree of life for the genera of Chinese vascular plants
	Chen, Zhi-Duan; Yang, Tuo ; Lin, Li ; Lu, Li-Min ; Li, Hong-Lei ; Sun, Miao ; Liu, Bing ; Chen, Min ; Niu, Yan-Ting ; Ye, Jian-Fei ; Cao, Zhi-Yong ; Liu, Hong-Mei ; Wang, Xiao-Ming ; Wang, Wei ; Zhang, Jing-Bo ; Meng, Zhen ; Cao, Wei ; Li, Jian-Hui ; Wu, Sheng-Dan ; Zhao, Hui-Ling ; Liu, Zhong-Jian ; Du, Zhi-Yuan ; Wang, Qing-Feng ; Guo, Jing ; Tan, Xin-Xin ; Su, Jun-Xia ; Zhang, Lin-Jing ; Yang, Lei-Lei ; Liao, Yi-Ying ; Li, Ming-He ; Zhang, Guo-Qiang ; Chung, Shih-Wen ; Zhang, Jian ; Xiang, Kun-Li ; Li, Rui-Qi ; Soltis, Douglas E.; Soltis, Pamela S.; Zhou, Shi-Liang ; Ran, Jin-Hua ; Wang, Xiao-Quan; Jin, Xiao-Hua; Chen, You-Sheng ; Gao, Tian-Gang ; Li, Jian-Hua ; Zhang, Shou-Zhou ; Lu, An-Ming
	2016
发表期刊	JOURNAL OF SYSTEMATICS AND EVOLUTION
ISSN	1674-4918
卷号	54 期号:4 页码:277-306
摘要	We reconstructed a phylogenetic tree of Chinese vascular plants (Tracheophyta) using sequences of the chloroplast genes atpB, matK, ndhF, and rbcL and mitochondrial matR. We produced a matrix comprising 6098 species and including 13 695 DNA sequences, of which 1803 were newly generated. Our taxonomic sampling spanned 3114 genera representing 323 families of Chinese vascular plants, covering more than 93% of all genera known from China. The comprehensive large phylogeny supports most relationships among and within families recognized by recent molecular phylogenetic studies for lycophytes, ferns (monilophytes), gymnosperms, and angiosperms. For angiosperms, most families in Angiosperm Phylogeny Group IV are supported as monophyletic, except for a paraphyletic Dipterocarpaceae and Santalaceae. The infrafamilial relationships of several large families and monophyly of some large genera are well supported by our dense taxonomic sampling. Our results showed that two species of Eberhardtia are sister to a clade formed by all other taxa of Sapotaceae, except Sarcosperma. We have made our phylogeny of Chinese vascular plants publically available for the creation of subtrees via SoTree (http://www.darwintree.cn/flora/index.shtml), an automated phylogeny assembly tool for ecologists.
关键词	China DarwinTree megaphylogeny regional tree of life SoTree vascular plants
学科领域	Plant Sciences
DOI	10.1111/jse.12219
收录类别	SCI
语种	英语
WOS关键词	SEED PLANTS ; EXTANT GYMNOSPERMS ; NUCLEOTIDE-SEQUENCES ; MOLECULAR PHYLOGENY ; DNA-SEQUENCES ; NUCLEAR GENES ; DATA SETS ; CHLOROPLAST ; EVOLUTION ; MITOCHONDRIAL
WOS研究方向	Science Citation Index Expanded (SCI-EXPANDED)
WOS记录号	WOS:000383771900002
出版者	WILEY
Special Issue	SI
文献子类	Article
出版地	HOBOKEN
EISSN	1759-6831
资助机构	National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31590822] ; National Key Basic Research Program of ChinaNational Basic Research Program of China [2014CB954100, 31270268, 31270269] ; Chinese Academy of Sciences International Institution Development Program [SAJC201315] ; Shenzhen Science and Technology Innovation Council Funding [KQC 201105310009A] ; Science and Technology Basic Work [2013FY112100] ; Chinese Academy of Sciences External Cooperation Program of BIC [GJHZ201321] ; Chinese Academy of Sciences Visiting Professorship for Senior International Scientists [2011T1S24] ; US National Science Foundation for Open tree [DEB-1208428] ; iDigBio [EF-1115210] ; Direct For Biological SciencesNational Science Foundation (NSF)NSF - Directorate for Biological Sciences (BIO) [1115210, 1208428] Funding Source: National Science Foundation ; Div Of Biological InfrastructureNational Science Foundation (NSF)NSF - Directorate for Biological Sciences (BIO) [1547229] Funding Source: National Science Foundation
作者邮箱	zhiduan@ibcas.ac.cn ; szzhang@126.com ; anmin@ibcas.ac.cn
作品OA属性	Bronze
引用统计	被引频次：82[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.ibcas.ac.cn/handle/2S10CLM1/25007
专题	系统与进化植物学国家重点实验室
作者单位	1.[Chen, Zhi-Duan 2.Yang, Tuo 3.Lin, Li 4.Lu, Li-Min 5.Li, Hong-Lei 6.Sun, Miao 7.Liu, Bing 8.Chen, Min 9.Niu, Yan-Ting 10.Ye, Jian-Fei 11.Cao, Zhi-Yong 12.Wang, Wei 13.Zhang, Jing-Bo 14.Zhang, Jian 15.Xiang, Kun-Li 16.Li, Rui-Qi 17.Zhou, Shi-Liang 18.Ran, Jin-Hua 19.Wang, Xiao-Quan 20.Jin, Xiao-Hua 21.Chen, You-Sheng 22.Gao, Tian-Gang 23.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China 24.[Li, Hong-Lei 25.Liu, Hong-Mei 26.Wang, Xiao-Ming 27.Yang, Lei-Lei 28.Liao, Yi-Ying 29.Fairylake Bot Garden, Shenzhen Key Lab Southern Subtrop Plant Divers, Shenzhen, Peoples R China 30.Chinese Acad Sci, Shenzhen 518004, Peoples R China 31.[Meng, Zhen 32.Cao, Wei 33.Chinese Acad Sci, Comp Network Informat Ctr, Beijing 100190, Peoples R China 34.[Wu, Sheng-Dan 35.Zhao, Hui-Ling 36.Guo, Jing 37.Tan, Xin-Xin 38.Su, Jun-Xia 39.Shanxi Normal Univ, Coll Life Sci, Linfen 041004, Peoples R China 40.[Liu, Zhong-Jian 41.Li, Ming-He 42.Orchid Conservat & Res Ctr Shenzhen, Shenzhen 518114, Peoples R China 43.[Du, Zhi-Yuan 44.Chinese Acad Sci, Wuhan Bot Garden, Wuhan 430074, Peoples R China 45.Taiwan Forestry Res Inst, Dept Bot, 20 Nan Hai Rd, Taipei 100, Peoples R China 46.[Soltis, Douglas E.] Univ Florida, Dept Biol, Gainesville, FL 32611 USA 47.[Soltis, Douglas E. 48.Soltis, Pamela S.] Univ Florida, Florida Museum Nat Hist, Gainesville, FL 32611 USA 49.Soltis, Pamela S.] Univ Florida, Genet Inst, Gainesville, FL 32610 USA 50.Hope Coll, Dept Biol, Holland, MI 49423 USA 51.[Yang, Tuo 52.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
推荐引用方式 GB/T 7714	Chen, Zhi-Duan,Yang, Tuo,Lin, Li,et al. Tree of life for the genera of Chinese vascular plants[J]. JOURNAL OF SYSTEMATICS AND EVOLUTION,2016,54(4):277-306.
APA	Chen, Zhi-Duan.,Yang, Tuo.,Lin, Li.,Lu, Li-Min.,Li, Hong-Lei.,...&Lu, An-Ming.(2016).Tree of life for the genera of Chinese vascular plants.JOURNAL OF SYSTEMATICS AND EVOLUTION,54(4),277-306.
MLA	Chen, Zhi-Duan,et al."Tree of life for the genera of Chinese vascular plants".JOURNAL OF SYSTEMATICS AND EVOLUTION 54.4(2016):277-306.

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