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| Tree of life for the genera of Chinese vascular plants | |
Chen, Zhi-Duan ; Yang, Tuo; Lin, Li; Lu, Li-Min; Li, Hong-Lei; Sun, Miao; Liu, Bing; Chen, Min; Niu, Yan-Ting; Ye, Jian-Fei; Cao, Zhi-Yong; Liu, Hong-Mei; Wang, Xiao-Ming; Wang, Wei; Zhang, Jing-Bo; Meng, Zhen; Cao, Wei; Li, Jian-Hui; Wu, Sheng-Dan; Zhao, Hui-Ling; Liu, Zhong-Jian; Du, Zhi-Yuan; Wang, Qing-Feng; Guo, Jing; Tan, Xin-Xin; Su, Jun-Xia; Zhang, Lin-Jing; Yang, Lei-Lei; Liao, Yi-Ying; Li, Ming-He; Zhang, Guo-Qiang; Chung, Shih-Wen; Zhang, Jian; Xiang, Kun-Li; Li, Rui-Qi; Soltis, Douglas E.; Soltis, Pamela S.; Zhou, Shi-Liang; Ran, Jin-Hua; Wang, Xiao-Quan; Jin, Xiao-Hua; Chen, You-Sheng; Gao, Tian-Gang; Li, Jian-Hua; Zhang, Shou-Zhou; Lu, An-Ming
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| 2016 | |
| Source Publication | JOURNAL OF SYSTEMATICS AND EVOLUTION
 |
| ISSN | 1674-4918 |
| Volume | 54Issue:4Pages:277-306 |
| Abstract | We reconstructed a phylogenetic tree of Chinese vascular plants (Tracheophyta) using sequences of the chloroplast genes atpB, matK, ndhF, and rbcL and mitochondrial matR. We produced a matrix comprising 6098 species and including 13 695 DNA sequences, of which 1803 were newly generated. Our taxonomic sampling spanned 3114 genera representing 323 families of Chinese vascular plants, covering more than 93% of all genera known from China. The comprehensive large phylogeny supports most relationships among and within families recognized by recent molecular phylogenetic studies for lycophytes, ferns (monilophytes), gymnosperms, and angiosperms. For angiosperms, most families in Angiosperm Phylogeny Group IV are supported as monophyletic, except for a paraphyletic Dipterocarpaceae and Santalaceae. The infrafamilial relationships of several large families and monophyly of some large genera are well supported by our dense taxonomic sampling. Our results showed that two species of Eberhardtia are sister to a clade formed by all other taxa of Sapotaceae, except Sarcosperma. We have made our phylogeny of Chinese vascular plants publically available for the creation of subtrees via SoTree (http://www.darwintree.cn/flora/index.shtml), an automated phylogeny assembly tool for ecologists. |
| Keyword | China DarwinTree megaphylogeny regional tree of life SoTree vascular plants |
| Subject Area | Plant Sciences |
| DOI | 10.1111/jse.12219 |
| Indexed By | SCI |
| Language | 英语 |
| WOS Keyword | SEED PLANTS ; EXTANT GYMNOSPERMS ; NUCLEOTIDE-SEQUENCES ; MOLECULAR PHYLOGENY ; DNA-SEQUENCES ; NUCLEAR GENES ; DATA SETS ; CHLOROPLAST ; EVOLUTION ; MITOCHONDRIAL |
| WOS Research Area | Science Citation Index Expanded (SCI-EXPANDED) |
| WOS ID | WOS:000383771900002 |
| Publisher | WILEY |
| Special Issue | SI |
| Subtype | Article |
| Publication Place | HOBOKEN |
| EISSN | 1759-6831 |
| Funding Organization | National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31590822] ; National Key Basic Research Program of ChinaNational Basic Research Program of China [2014CB954100, 31270268, 31270269] ; Chinese Academy of Sciences International Institution Development Program [SAJC201315] ; Shenzhen Science and Technology Innovation Council Funding [KQC 201105310009A] ; Science and Technology Basic Work [2013FY112100] ; Chinese Academy of Sciences External Cooperation Program of BIC [GJHZ201321] ; Chinese Academy of Sciences Visiting Professorship for Senior International Scientists [2011T1S24] ; US National Science Foundation for Open tree [DEB-1208428] ; iDigBio [EF-1115210] ; Direct For Biological SciencesNational Science Foundation (NSF)NSF - Directorate for Biological Sciences (BIO) [1115210, 1208428] Funding Source: National Science Foundation ; Div Of Biological InfrastructureNational Science Foundation (NSF)NSF - Directorate for Biological Sciences (BIO) [1547229] Funding Source: National Science Foundation |
| Corresponding Author Email | zhiduan@ibcas.ac.cn ; szzhang@126.com ; anmin@ibcas.ac.cn |
| OA | Bronze |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | http://ir.ibcas.ac.cn/handle/2S10CLM1/25007 |
| Collection | 系统与进化植物学国家重点实验室 |
| Affiliation | 1.[Chen, Zhi-Duan 2.Yang, Tuo 3.Lin, Li 4.Lu, Li-Min 5.Li, Hong-Lei 6.Sun, Miao 7.Liu, Bing 8.Chen, Min 9.Niu, Yan-Ting 10.Ye, Jian-Fei 11.Cao, Zhi-Yong 12.Wang, Wei 13.Zhang, Jing-Bo 14.Zhang, Jian 15.Xiang, Kun-Li 16.Li, Rui-Qi 17.Zhou, Shi-Liang 18.Ran, Jin-Hua 19.Wang, Xiao-Quan 20.Jin, Xiao-Hua 21.Chen, You-Sheng 22.Gao, Tian-Gang 23.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China 24.[Li, Hong-Lei 25.Liu, Hong-Mei 26.Wang, Xiao-Ming 27.Yang, Lei-Lei 28.Liao, Yi-Ying 29.Fairylake Bot Garden, Shenzhen Key Lab Southern Subtrop Plant Divers, Shenzhen, Peoples R China 30.Chinese Acad Sci, Shenzhen 518004, Peoples R China 31.[Meng, Zhen 32.Cao, Wei 33.Chinese Acad Sci, Comp Network Informat Ctr, Beijing 100190, Peoples R China 34.[Wu, Sheng-Dan 35.Zhao, Hui-Ling 36.Guo, Jing 37.Tan, Xin-Xin 38.Su, Jun-Xia 39.Shanxi Normal Univ, Coll Life Sci, Linfen 041004, Peoples R China 40.[Liu, Zhong-Jian 41.Li, Ming-He 42.Orchid Conservat & Res Ctr Shenzhen, Shenzhen 518114, Peoples R China 43.[Du, Zhi-Yuan 44.Chinese Acad Sci, Wuhan Bot Garden, Wuhan 430074, Peoples R China 45.Taiwan Forestry Res Inst, Dept Bot, 20 Nan Hai Rd, Taipei 100, Peoples R China 46.[Soltis, Douglas E.] Univ Florida, Dept Biol, Gainesville, FL 32611 USA 47.[Soltis, Douglas E. 48.Soltis, Pamela S.] Univ Florida, Florida Museum Nat Hist, Gainesville, FL 32611 USA 49.Soltis, Pamela S.] Univ Florida, Genet Inst, Gainesville, FL 32610 USA 50.Hope Coll, Dept Biol, Holland, MI 49423 USA 51.[Yang, Tuo 52.Univ Chinese Acad Sci, Beijing 100049, Peoples R China |
| Recommended Citation GB/T 7714 | Chen, Zhi-Duan,Yang, Tuo,Lin, Li,et al. Tree of life for the genera of Chinese vascular plants[J]. JOURNAL OF SYSTEMATICS AND EVOLUTION,2016,54(4):277-306. |
| APA | Chen, Zhi-Duan.,Yang, Tuo.,Lin, Li.,Lu, Li-Min.,Li, Hong-Lei.,...&Lu, An-Ming.(2016).Tree of life for the genera of Chinese vascular plants.JOURNAL OF SYSTEMATICS AND EVOLUTION,54(4),277-306. |
| MLA | Chen, Zhi-Duan,et al."Tree of life for the genera of Chinese vascular plants".JOURNAL OF SYSTEMATICS AND EVOLUTION 54.4(2016):277-306. |
| Files in This Item: | ||||||
| File Name/Size | DocType | Version | Access | License | ||
| jse.12219.pdf（2587KB） | 期刊论文 | 出版稿 | 开放获取 | CC BY-NC-SA | View Application Full Text | |
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