A supermatrix approach provides a comprehensive genus-level phylogeny for Gentianales

doi:10.1111/jse.12192

	A supermatrix approach provides a comprehensive genus-level phylogeny for Gentianales
	Yang, Lei-Lei ; Li, Hong-Lei ; Wei, Lei 4; Yang, Tuo ; Kuang, Dai-Yong ; Li, Ming-Hong ; Liao, Yi-Ying ; Chen, Zhi-Duan; Wu, Hong ; Zhang, Shou-Zhou
	2016
发表期刊	JOURNAL OF SYSTEMATICS AND EVOLUTION
ISSN	1674-4918
卷号	54 期号:4 页码:400-415
摘要	Gentianales consist of Apocynaceae, Gelsemiaceae, Gentianaceae, Loganiaceae, and Rubiaceae, of which the majority are woody plants in tropical and subtropical areas. Despite extensive efforts in reconstructing the phylogeny of Gentianales based on molecular data, some interfamily and intrafamily relationships remain uncertain. We reconstructed the genus-level phylogeny of Gentianales based on the supermatrix of eight plastid markers (rbcL, matK, atpB, ndhF, rpl16, rps16, the trnL-trnF region, and atpB-rbcL spacer) and one mitochondrial gene (matR) using maximum likelihood. The major clades and their relationships retrieved in the present study concur with those of previous studies. All of the five families of Gentianales are monophyletic with strong support. We resolved Rubiaceae as sister to the remaining families in Gentianales and showed support for the sister relationship between Loganiaceae and Apocynaceae. Our results provide new insights into relationships among intrafamilial clades. For example, within Rubiaceae we found that Craterispermeae were sister to Morindeae + (Palicoureeae + Psychotrieae) and that Theligoneae were sister to Putorieae. Within Gentianaceae, our phylogeny revealed that Gentianeae were sister to Helieae and Potalieae, and subtribe Lisianthiinae were sister to Potaliinae and Faroinae. Within Loganiaceae, we found Neuburgia as sister to Spigelieae. Within Apocynaceae, our results supported Amsonieae as sister to Melodineae, and Hunterieae as sister to a clade comprising Plumerieae + (Carisseae + APSA). We also confirmed the monophyly of Perplocoideae and the relationships among Baisseeae + (Secamonoideae + Asclepiadoideae).
关键词	Gentianales maximum likelihood phylogeny supermatrix approach
学科领域	Plant Sciences
DOI	10.1111/jse.12192
收录类别	SCI
语种	英语
WOS关键词	COFFEE FAMILY ; RAUVOLFIOIDEAE APOCYNACEAE ; MAXIMUM-LIKELIHOOD ; RBCL SEQUENCES ; MOLECULAR-DATA ; DNA MARKERS ; CLASSIFICATION ; RUBIACEAE ; CHLOROPLAST ; POSITION
WOS研究方向	Science Citation Index Expanded (SCI-EXPANDED)
WOS记录号	WOS:000383771900009
出版者	WILEY
Special Issue	SI
文献子类	Article
出版地	HOBOKEN
EISSN	1759-6831
资助机构	Scientific Research Fund of Fairylake Botanical Garden ; Shenzhen Key Laboratory of Southern Subtropical Plant Diversity [SSTLAB-2014-04] ; National Key Basic Research Program of ChinaNational Basic Research Program of China [2014CB954100] ; Chinese Academy of Sciences International Institution Development Program [SAJC201315] ; Shenzhen Science and Technology Innovation Council Fund [KQC 201105310009A] ; Chinese Academy of Sciences External Cooperation Program of BIC [GJHZ201321] ; National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31500175]
作者邮箱	zhiduan@ibcas.ac.cn ; wh@scau.edu.cn ; shouzhouz@126.com
作品OA属性	Bronze
引用统计	被引频次：17[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.ibcas.ac.cn/handle/2S10CLM1/25010
专题	系统与进化植物学国家重点实验室
作者单位	1.South China Agr Univ, Coll Life Sci, State Key Lab Conservat & Utilizat Subtrop Agrobi, Guangzhou 510642, Guangdong, Peoples R China 2.Fairylake Bot Garden, Shenzhen Key Lab Southern Subtrop Plant Divers, Shenzhen, Peoples R China 3.Chinese Acad Sci, Shenzhen 518004, Guangdong, Peoples R China 4.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China 5.State Ocean Adm, Marine Environm Monitor Ctr Shanwei, Shanwei 516600, Guangdong, Peoples R China 6.Hengshan Natl Nat Reserve Adm, Hengshan 421900, Hunan, Peoples R China
推荐引用方式 GB/T 7714	Yang, Lei-Lei,Li, Hong-Lei,Wei, Lei,et al. A supermatrix approach provides a comprehensive genus-level phylogeny for Gentianales[J]. JOURNAL OF SYSTEMATICS AND EVOLUTION,2016,54(4):400-415.
APA	Yang, Lei-Lei.,Li, Hong-Lei.,Wei, Lei.,Yang, Tuo.,Kuang, Dai-Yong.,...&Zhang, Shou-Zhou.(2016).A supermatrix approach provides a comprehensive genus-level phylogeny for Gentianales.JOURNAL OF SYSTEMATICS AND EVOLUTION,54(4),400-415.
MLA	Yang, Lei-Lei,et al."A supermatrix approach provides a comprehensive genus-level phylogeny for Gentianales".JOURNAL OF SYSTEMATICS AND EVOLUTION 54.4(2016):400-415.

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