Phylogeny of the Rosidae: A dense taxon sampling analysis

doi:10.1111/jse.12211

	Phylogeny of the Rosidae: A dense taxon sampling analysis
	Sun, Miao 1; Naeem, Rehan 4; Su, Jun-Xia ; Cao, Zhi-Yong ; Burleigh, J. Gordon ; Soltis, Pamela S.; Soltis, Douglas E.; Chen, Zhi-Duan
	2016
发表期刊	JOURNAL OF SYSTEMATICS AND EVOLUTION
ISSN	1674-4918
卷号	54 期号:4 页码:363-391
摘要	Rosidae, a clade of approximately 90 000 species of angiosperms, exhibits remarkable morphological diversity and extraordinary heterogeneity in habitats and life forms. Resolving phylogenetic relationships within Rosidae has been difficult, in large part due to nested radiations and the enormous size of the clade. Current estimates of phylogeny contain areas of poor resolution and/or support, and there have been few attempts to synthesize the available data into a comprehensive view of Rosidae phylogeny. We aim to improve understanding of the phylogeny of Rosidae with a dense sampling scheme using both newly generated sequences and data from GenBank of the chloroplast rbcL, atpB, and matK genes and the mitochondrial matR gene. We combined sequences from 9300 species, representing 2775 genera, 138 families, and 17 orders into a supermatrix. Although 59.26% of the cells in the supermatrix have no data, our results generally agree with previous estimates of Rosidae phylogeny and provide greater resolution and support in several areas of the topology. Several noteworthy phylogenetic relationships are recovered, including some novel relationships. Two families (Euphorbiaceae and Salvadoraceae) and 467 genera are recovered as non-monophyletic in our sampling, suggesting the need for future systematic studies of these groups. Our study shows the value of a botanically informed bioinformatics approach and dense taxonomic sampling for resolving rosid relationships. The resulting tree provides a starting point for large-scale analyses of the evolutionary patterns within Rosidae.
关键词	phylogeny rapid radiation Rosidae supermatrix
学科领域	Plant Sciences
DOI	10.1111/jse.12211
收录类别	SCI
语种	英语
WOS关键词	NUCLEAR RIBOSOMAL DNA ; INTERNAL TRANSCRIBED SPACER ; MOLECULAR PHYLOGENETICS ; CHARACTER EVOLUTION ; SEQUENCE DATA ; HISTORICAL BIOGEOGRAPHY ; CHLOROPLAST RBCL ; PLASTID MATK ; SENSU-LATO ; EARLY DIVERSIFICATION
WOS研究方向	Science Citation Index Expanded (SCI-EXPANDED)
WOS记录号	WOS:000383771900007
出版者	WILEY
Special Issue	SI
文献子类	Article
出版地	HOBOKEN
EISSN	1759-6831
资助机构	National Key Basic Research Program of ChinaNational Basic Research Program of China [2014CB954100] ; National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31590822, 31270268] ; US National Science FoundationNational Science Foundation (NSF) [DEB-1208428] ; Chinese Academy of Sciences Visiting Professorship for Senior International Scientists [2011T1S24] ; State Key Laboratory of Systematic and Evolutionary Botany [LSEB2011-10] ; National Science & Technology Infrastructure - National Specimen Information Infrastructure [2005DKA21400] ; Division Of Integrative Organismal SystemsNational Science Foundation (NSF)NSF - Directorate for Biological Sciences (BIO) [1208428] Funding Source: National Science Foundation
作者邮箱	dsoltis@ufl.edu ; zhiduan@ibcas.ac.cn
作品OA属性	Bronze
引用统计	被引频次：61[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.ibcas.ac.cn/handle/2S10CLM1/25083
专题	系统与进化植物学国家重点实验室
作者单位	1.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China 2.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 3.Sun, Miao; Burleigh, J. Gordon; Soltis, Douglas E.] Univ Florida, Dept Biol, Gainesville, FL 32611 USA 4.Sun, Miao; Soltis, Pamela S.; Soltis, Douglas E.] Univ Florida, Florida Museum Nat Hist, Gainesville, FL 32611 USA 5.Kohat Univ Sci & Technol, Dept Biotechnol & Genet Engn, Kohat 26000, Pakistan 6.Shanxi Normal Univ, Coll Life Sci, Linfen 041004, Shanxi, Peoples R China 7.Burleigh, J. Gordon; Soltis, Pamela S.; Soltis, Douglas E.] Univ Florida, Genet Inst, Gainesville, FL 32608 USA
推荐引用方式 GB/T 7714	Sun, Miao,Naeem, Rehan,Su, Jun-Xia,et al. Phylogeny of the Rosidae: A dense taxon sampling analysis[J]. JOURNAL OF SYSTEMATICS AND EVOLUTION,2016,54(4):363-391.
APA	Sun, Miao.,Naeem, Rehan.,Su, Jun-Xia.,Cao, Zhi-Yong.,Burleigh, J. Gordon.,...&Chen, Zhi-Duan.(2016).Phylogeny of the Rosidae: A dense taxon sampling analysis.JOURNAL OF SYSTEMATICS AND EVOLUTION,54(4),363-391.
MLA	Sun, Miao,et al."Phylogeny of the Rosidae: A dense taxon sampling analysis".JOURNAL OF SYSTEMATICS AND EVOLUTION 54.4(2016):363-391.

条目包含的文件
文件名称/大小	文献类型	版本类型	开放类型	使用许可
jse.12211.pdf（1826KB）	期刊论文	出版稿	开放获取	CC BY-NC-SA	浏览请求全文