Transcriptome profiling of developmental leaf senescence in sorghum (Sorghum bicolor)

doi:10.1007/s11103-016-0532-1

	Transcriptome profiling of developmental leaf senescence in sorghum (Sorghum bicolor)
	Wu, Xiao-Yuan ; Hu, Wei-Juan ; Luo, Hong ; Xia, Yan ; Zhao, Yi ; Wang, Li-Dong ; Zhang, Li-Min ; Luo, Jing-Chu ; Jing, Hai-Chun
	2016
发表期刊	PLANT MOLECULAR BIOLOGY
ISSN	0167-4412
卷号	92 期号:4-5 页码:555-580
摘要	This piece of the submission is being sent via mail. Leaf senescence is essential for the nutrient economy of crops and is executed by so-called senescence-associated genes (SAGs). Here we explored the monocot C-4 model crop Sorghum bicolor for a holistic picture of SAG profiles by RNA-seq. Leaf samples were collected at four stages during developmental senescence, and in total, 3396 SAGs were identified, predominantly enriched in GO categories of metabolic processes and catalytic activities. These genes were enriched in 13 KEGG pathways, wherein flavonoid and phenylpropanoid biosynthesis and phenylalanine metabolism were overrepresented. Seven regions on Chromosomes 1, 4, 5 and 7 contained SAG 'hotspots' of duplicated genes or members of cupin superfamily involved in manganese ion binding and nutrient reservoir activity. Forty-eight expression clusters were identified, and the candidate orthologues of the known important senescence transcription factors such as ORE1, EIN3 and WRKY53 showed SAG expression patterns, implicating their possible roles in regulating sorghum leaf senescence. Comparison of developmental senescence with salt- and dark- induced senescence allowed for the identification of 507 common SAGs, 1996 developmental specific SAGs as well as 176 potential markers for monitoring senescence in sorghum. Taken together, these data provide valuable resources for comparative genomics analyses of leaf senescence and potential targets for the manipulation of genetic improvement of Sorghum bicolor.
关键词	Leaf senescence RNA-seq Senescence-associated genes Sorghum bicolor Transcriptome
学科领域	Biochemistry & Molecular Biology ; Plant Sciences
DOI	10.1007/s11103-016-0532-1
收录类别	SCI
语种	英语
WOS关键词	IDEOTYPES GENETIC-IMPROVEMENT ; GLUTATHIONE S-TRANSFERASES ; DNA-BINDING-SPECIFICITY ; STAY-GREEN ; SWEET SORGHUM ; L. MOENCH ; NITROGEN REMOBILIZATION ; ARABIDOPSIS-THALIANA ; SIGNALING PATHWAYS ; DROUGHT RESISTANCE
WOS研究方向	Science Citation Index Expanded (SCI-EXPANDED)
WOS记录号	WOS:000387114900011
出版者	SPRINGER
文献子类	Article
出版地	DORDRECHT
EISSN	1573-5028
资助机构	National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31271797, 30970252, 31471570] ; Ministry of Science and Technology of the People's Republic of ChinaMinistry of Science and Technology, China [2013BAD22B01, 2015BAD15B03]
作者邮箱	luojc@pku.edu.cn ; hcjing@ibcas.ac.cn
引用统计	被引频次：29[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.ibcas.ac.cn/handle/2S10CLM1/25254
专题	中科院北方资源植物重点实验室
作者单位	1.[Wu, Xiao-Yuan 2.Hu, Wei-Juan 3.Luo, Hong 4.Xia, Yan 5.Wang, Li-Dong 6.Zhang, Li-Min 7.Chinese Acad Sci, Inst Bot, Key Lab Plant Resources, Beijing 100093, Peoples R China 8.[Zhao, Yi 9.Peking Univ, Coll Life Sci, Beijing 100871, Peoples R China 10.Peking Univ, State Key Lab Prot & Plant Gene Res, Beijing 100871, Peoples R China 11.Chinese Acad Sci, Inner Mongolia Res Ctr Practaculture, Beijing 100093, Peoples R China 12.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 13.Chinese Acad Sci, Inst Genet & Dev Biol, Beijing, Peoples R China
推荐引用方式 GB/T 7714	Wu, Xiao-Yuan,Hu, Wei-Juan,Luo, Hong,et al. Transcriptome profiling of developmental leaf senescence in sorghum (Sorghum bicolor)[J]. PLANT MOLECULAR BIOLOGY,2016,92(4-5):555-580.
APA	Wu, Xiao-Yuan.,Hu, Wei-Juan.,Luo, Hong.,Xia, Yan.,Zhao, Yi.,...&Jing, Hai-Chun.(2016).Transcriptome profiling of developmental leaf senescence in sorghum (Sorghum bicolor).PLANT MOLECULAR BIOLOGY,92(4-5),555-580.
MLA	Wu, Xiao-Yuan,et al."Transcriptome profiling of developmental leaf senescence in sorghum (Sorghum bicolor)".PLANT MOLECULAR BIOLOGY 92.4-5(2016):555-580.

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