COMPLETE CHLOROPLAST GENOME OF A VALUABLE MEDICINAL PLANT, HUPERZIA SERRATA (LYCOPODIACEAE), AND COMPARISON WITH ITS CONGENER

doi:10.3732/apps.1600071

	COMPLETE CHLOROPLAST GENOME OF A VALUABLE MEDICINAL PLANT, HUPERZIA SERRATA (LYCOPODIACEAE), AND COMPARISON WITH ITS CONGENER
	Guo, Zhi-You ; Zhang, Hong-Rui ; Shrestha, Nawal ; Zhang, Xian-Chun
	2016
发表期刊	APPLICATIONS IN PLANT SCIENCES
ISSN	2168-0450
卷号	4 期号:11
摘要	Premise of the study: Here we report the complete chloroplast genome of the important medicinal species Huperzia serrata (Lycopodiaceae) and compare it to the chloroplast genome of the congeneric species H. lucidula. Methods and Results: The whole chloroplast genome of H. serrata was sequenced using an Illumina platform and assembled with Geneious version R9.0.5. The genome size of H. serrata was 154,176 bp, with 36.3% GC content. The complete chloroplast genome contained 120 unique genes, including 86 coding genes, four rRNA genes, and 30 tRNA genes. Comparison with the chloroplast genome of H. lucidula revealed three highly variable regions (rps16-chlB, ycf12-trnR, and ycf1) between these two species and 252 mutation events including 27 insertion/deletion polymorphisms and 225 single-nucleotide polymorphisms (SNPs). Ninety-two SNPs were identified in the gene-coding regions. In addition, 18 microsatellite sites were found, which can potentially be used in phylogeographic studies. Conclusions: The complete chloroplast genome of H. serrata is reported here, and will be a valuable genome resource for further phylogenetic, evolutionary, and medical studies of medicinal plants in the genus Huperzia.
关键词	Huperzia serrata lycophytes Lycopodiaceae mutation next-generation sequencing
学科领域	Plant Sciences
DOI	10.3732/apps.1600071
收录类别	SCI
语种	英语
WOS关键词	SELAGINELLA-UNCINATA ; TRNASCAN-SE ; SEQUENCE ; LYCOPHYTE ; SOFTWARE ; PHYLOGENY
WOS研究方向	Science Citation Index Expanded (SCI-EXPANDED)
WOS记录号	WOS:000388509700002
出版者	WILEY
文献子类	Article
出版地	HOBOKEN
资助机构	Natural Science Foundation of Guizhou Province [[2014]2156] ; National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31470317]
作者邮箱	zhangxc@ibcas.ac.cn
作品OA属性	Green Published, gold
引用统计	被引频次：15[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.ibcas.ac.cn/handle/2S10CLM1/25365
专题	中科院植物分子生理学重点实验室
作者单位	1.[Guo, Zhi-You 2.Zhang, Hong-Rui 3.Shrestha, Nawal 4.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China 5.Qiannan Normal Univ Nationalities, Coll Biol Sci & Agr, Duyun 558000, Guizhou, Peoples R China 6.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
推荐引用方式 GB/T 7714	Guo, Zhi-You,Zhang, Hong-Rui,Shrestha, Nawal,et al. COMPLETE CHLOROPLAST GENOME OF A VALUABLE MEDICINAL PLANT, HUPERZIA SERRATA (LYCOPODIACEAE), AND COMPARISON WITH ITS CONGENER[J]. APPLICATIONS IN PLANT SCIENCES,2016,4(11).
APA	Guo, Zhi-You,Zhang, Hong-Rui,Shrestha, Nawal,&Zhang, Xian-Chun.(2016).COMPLETE CHLOROPLAST GENOME OF A VALUABLE MEDICINAL PLANT, HUPERZIA SERRATA (LYCOPODIACEAE), AND COMPARISON WITH ITS CONGENER.APPLICATIONS IN PLANT SCIENCES,4(11).
MLA	Guo, Zhi-You,et al."COMPLETE CHLOROPLAST GENOME OF A VALUABLE MEDICINAL PLANT, HUPERZIA SERRATA (LYCOPODIACEAE), AND COMPARISON WITH ITS CONGENER".APPLICATIONS IN PLANT SCIENCES 4.11(2016).

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