Genome-wide analysis of phylogeny, expression profile and sub-cellular localization of SKP1-Like genes in wild tomato

doi:10.1016/j.plantsci.2015.06.005

	Genome-wide analysis of phylogeny, expression profile and sub-cellular localization of SKP1-Like genes in wild tomato
	Zhang, YueQin 1; Wang, CuiPing 1,3; Lin, QingFang 1,2; Gao, FengHua 1; Ma, Yan 1; Zhang, Min 1; Lin, YueHui 1; Ma, QingHu 1; Hua, XueJun 1
	2015
发表期刊	PLANT SCIENCE
ISSN	0168-9452
卷号	238 页码:105-114
摘要	SKP1 is a core component of SCF complex, a major type of E3 ubiquitin ligase catalyzing the last step in ubiquitin-mediated protein degradation pathway. In present study, SKP1 gene family in Solanum pimpinellifolium (SSK), a wild species of tomato, was investigated. A total of 19 SSK genes were identified through homologous search. Their chromosomal locations, gene structures, phylogeny, expression profiles, sub-cellular localizations and protein-protein interaction patterns with putative F-box proteins were analyzed in detail. The high homology and similar expression patterns among clustered SSK genes in chromosome suggested that they may have evolved from duplication events and are functionally redundant. Sub-cellular localization indicated that most of the SSK proteins are distributed in both cytosol and nucleus, except for SSK8, which is detected in cytosol only. Tissue-specific expression patterns suggested that many SSK genes may be involved in tomato fruit development. Furthermore, several SSK genes were found to be responsive to heat stress and salicylic acid treatment. Based on phylogenetic analysis, expression profiles and protein interaction property, we proposed that tomato SSK1 and SSK2 might have similar function to ASK1 and ASK2 in Arabidopsis. (C) 2015 Elsevier Ireland Ltd. All rights reserved.
关键词	SKP1 Tomato Phylogenetic analysis Expression analysis Sub-cellular localization Yeast two-hybridization
学科领域	Biochemistry & Molecular Biology ; Plant Sciences
DOI	10.1016/j.plantsci.2015.06.005
收录类别	SCI
语种	英语
WOS关键词	F-BOX PROTEIN ; CAENORHABDITIS-ELEGANS ; PROTEASOME PATHWAY ; LEAF SENESCENCE ; SKP1 ; DEGRADATION ; FAMILY ; PATTERNS ; ENCODES ; COMPLEX
WOS研究方向	Science Citation Index Expanded (SCI-EXPANDED)
WOS记录号	WOS:000360510500011
出版者	ELSEVIER IRELAND LTD
文献子类	Article
出版地	CLARE
资助机构	National Project for Transgenic Research [2014ZX08009-003]
作者邮箱	xjhua@ibcas.ac.cn
引用统计	被引频次：13[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.ibcas.ac.cn/handle/2S10CLM1/25574
专题	中科院北方资源植物重点实验室
作者单位	1.Chinese Acad Sci, Inst Bot, Key Lab Plant Resources, Beijing 100093, Peoples R China 2.Chinese Acad Sci, Inst Bot, Beijing Bot Garden, Beijing 100093, Peoples R China 3.Univ Chinese Acad Sci, Chinese Acad Sci, Beijing 100049, Peoples R China 4.Ningxia Forestry Inst, State Key Lab Seedling Bioengn, Yinchuan 750004, Peoples R China
推荐引用方式 GB/T 7714	Zhang, YueQin,Wang, CuiPing,Lin, QingFang,et al. Genome-wide analysis of phylogeny, expression profile and sub-cellular localization of SKP1-Like genes in wild tomato[J]. PLANT SCIENCE,2015,238:105-114.
APA	Zhang, YueQin.,Wang, CuiPing.,Lin, QingFang.,Gao, FengHua.,Ma, Yan.,...&Hua, XueJun.(2015).Genome-wide analysis of phylogeny, expression profile and sub-cellular localization of SKP1-Like genes in wild tomato.PLANT SCIENCE,238,105-114.
MLA	Zhang, YueQin,et al."Genome-wide analysis of phylogeny, expression profile and sub-cellular localization of SKP1-Like genes in wild tomato".PLANT SCIENCE 238(2015):105-114.

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