Deep phylogenetic incongruence in the angiosperm clade Rosidae

doi:10.1016/j.ympev.2014.11.003

	Deep phylogenetic incongruence in the angiosperm clade Rosidae
	Sun, Miao 1; Soltis, Douglas E.; Soltis, Pamela S.; Zhu, Xinyu 5; Burleigh, J. Gordon ; Chen, Zhiduan
	2015
发表期刊	MOLECULAR PHYLOGENETICS AND EVOLUTION
ISSN	1055-7903
卷号	83 页码:156-166
摘要	Analysis of large data sets can help resolve difficult nodes in the tree of life and also reveal complex evolutionary histories. The placement of the Celastrales-Oxalidales-Malpighiales (COM) clade within Rosidae remains one of the most confounding phylogenetic questions in angiosperms, with previous analyses placing it with either Fabidae or Malvidae. To elucidate the position of COM, we assembled multi-gene matrices of chloroplast, mitochondrial, and nuclear sequences, as well as large single- and multi-copy nuclear gene data sets. Analyses of multi-gene data sets demonstrate conflict between the chloroplast and both nuclear and mitochondrial data sets, and the results are robust to various character-coding and data-exclusion treatments. Analyses of single- and multi-copy nuclear loci indicate that most loci support the placement of COM with Malvidae, fewer loci support COM with Fabidae, and almost no loci support COM outside a clade of Fabidae and Malvidae. Although incomplete lineage sorting and ancient introgressive hybridization remain as plausible explanations for the conflict among loci, more complete sampling is necessary to evaluate these hypotheses fully. Our results emphasize the importance of genomic data sets for revealing deep incongruence and complex patterns of evolution. (C) 2014 Elsevier Inc. All rights reserved.
关键词	Hybridization Introgression Incomplete lineage sorting COM clade Incongruence Phylogenomics
学科领域	Biochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity
DOI	10.1016/j.ympev.2014.11.003
收录类别	SCI
语种	英语
WOS关键词	FLORAL STRUCTURAL-CHARACTERIZATION ; COPY NUCLEAR GENES ; PATERNAL INHERITANCE ; SPECIES TREES ; EVOLUTIONARY RELATIONSHIPS ; MATERNAL INHERITANCE ; MITOCHONDRIAL GENOME ; CHLOROPLAST CAPTURE ; MAMMAL PHYLOGENY ; MOLECULAR-DATA
WOS研究方向	Science Citation Index Expanded (SCI-EXPANDED)
WOS记录号	WOS:000350008400014
出版者	ACADEMIC PRESS INC ELSEVIER SCIENCE
文献子类	Article
出版地	SAN DIEGO
EISSN	1095-9513
资助机构	National Natural Science Foundation of China [NNSF 31270268] ; National Basic Research Program of China [2014CB954101] ; Chinese Academy of Sciences [2011T1S24] ; State Key Laboratory of Systematic and Evolutionary Botany [LSEB2011-10] ; US National Science Foundation [DEB-1301828]
作者邮箱	dsoltis@botany.ufl.edu ; zhiduan@ibcas.ac.cn
引用统计	被引频次：108[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.ibcas.ac.cn/handle/2S10CLM1/25635
专题	系统与进化植物学国家重点实验室
作者单位	1.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China 2.Univ Chinese Acad Sci, Beijing 100039, Peoples R China 3.Univ Florida, Dept Biol, Gainesville, FL 32611 USA 4.Soltis, Douglas E.; Soltis, Pamela S.] Univ Florida, Florida Museum Nat Hist, Gainesville, FL 32611 USA 5.Univ Florida, Genet Inst, Gainesville, FL 32610 USA 6.Nantong Univ, Sch Life Sci, Nantong 226007, Peoples R China
推荐引用方式 GB/T 7714	Sun, Miao,Soltis, Douglas E.,Soltis, Pamela S.,et al. Deep phylogenetic incongruence in the angiosperm clade Rosidae[J]. MOLECULAR PHYLOGENETICS AND EVOLUTION,2015,83:156-166.
APA	Sun, Miao,Soltis, Douglas E.,Soltis, Pamela S.,Zhu, Xinyu,Burleigh, J. Gordon,&Chen, Zhiduan.(2015).Deep phylogenetic incongruence in the angiosperm clade Rosidae.MOLECULAR PHYLOGENETICS AND EVOLUTION,83,156-166.
MLA	Sun, Miao,et al."Deep phylogenetic incongruence in the angiosperm clade Rosidae".MOLECULAR PHYLOGENETICS AND EVOLUTION 83(2015):156-166.

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