Population transcriptomics reveals a potentially positive role of expression diversity in adaptation

doi:10.1111/jipb.12287

	Population transcriptomics reveals a potentially positive role of expression diversity in adaptation
	Xu, Qin ; Xing, Shilai 4; Zhu, Caiyun 4; Liu, Wei ; Fan, Yangyang 1,2,4; Wang, Qian 4; Song, Zhihong 1,2,4; Yang, Wenhui 1,2,4; Luo, Fan ; Shang, Fei 1,2; Kang, Lifang 1,2; Chen, Wenli ; Yan, Juan 3; Li, Jianqiang 3; Sang, Tao1,2
	2015
发表期刊	JOURNAL OF INTEGRATIVE PLANT BIOLOGY
ISSN	1672-9072
卷号	57 期号:3 页码:284-299
摘要	While it is widely accepted that genetic diversity determines the potential of adaptation, the role that gene expression variation plays in adaptation remains poorly known. Here we show that gene expression diversity could have played a positive role in the adaptation of Miscanthus lutarioriparius. RNA-seq was conducted for 80 individuals of the species, with half planted in the energy crop domestication site and the other half planted in the control site near native habitats. A leaf reference transcriptome consisting of 18,503 high-quality transcripts was obtained using a pipeline developed for de novo assembling with population RNA-seq data. The population structure and genetic diversity of M. lutarioriparius were estimated based on 30,609 genic single nucleotide polymorphisms. Population expression (E-p) and expression diversity (E-d) were defined to measure the average level and the magnitude of variation of a gene expression in the population, respectively. It was found that expression diversity increased while genetic diversity decreased after the species was transplanted from the native habitats to the harsh domestication site, especially for genes involved in abiotic stress resistance, histone methylation, and biomass synthesis under water limitation. The increased expression diversity could have enriched phenotypic variation directly subject to selections in the new environment.
关键词	Adaptation artificial selection de novo assembling expression variation genetic diversity Miscanthus lutarioriparius population transcriptome
学科领域	Biochemistry & Molecular Biology ; Plant Sciences
DOI	10.1111/jipb.12287
收录类别	SCI
语种	英语
WOS关键词	GENE-EXPRESSION ; HIGHER-PLANTS ; ENERGY CROPS ; ORYZA-SATIVA ; GENOME ; EVOLUTION ; MAIZE ; NUCLEOTIDE ; SEQUENCE ; PATTERNS
WOS研究方向	Science Citation Index Expanded (SCI-EXPANDED)
WOS记录号	WOS:000350900500006
出版者	WILEY
文献子类	Article
出版地	HOBOKEN
EISSN	1744-7909
资助机构	National Natural Science Foundation of China [91131902] ; Chinese Academy of Sciences [KSCX2-EX-QR-1]
作者邮箱	sang@ibcas.ac.cn
作品OA属性	Bronze
引用统计	被引频次：25[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.ibcas.ac.cn/handle/2S10CLM1/25739
专题	系统与进化植物学国家重点实验室
作者单位	1.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China 2.Chinese Acad Sci, Key Lab Plant Resources, Inst Bot, Beijing 100093, Peoples R China 3.Chinese Acad Sci, Beijing Bot Garden, Inst Bot, Beijing 100093, Peoples R China 4.Chinese Acad Sci, Wuhan Bot Garden, Key Lab Plant Germplasm Enhancement & Special Agr, Wuhan 430074, Peoples R China 5.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
推荐引用方式 GB/T 7714	Xu, Qin,Xing, Shilai,Zhu, Caiyun,et al. Population transcriptomics reveals a potentially positive role of expression diversity in adaptation[J]. JOURNAL OF INTEGRATIVE PLANT BIOLOGY,2015,57(3):284-299.
APA	Xu, Qin.,Xing, Shilai.,Zhu, Caiyun.,Liu, Wei.,Fan, Yangyang.,...&Sang, Tao.(2015).Population transcriptomics reveals a potentially positive role of expression diversity in adaptation.JOURNAL OF INTEGRATIVE PLANT BIOLOGY,57(3),284-299.
MLA	Xu, Qin,et al."Population transcriptomics reveals a potentially positive role of expression diversity in adaptation".JOURNAL OF INTEGRATIVE PLANT BIOLOGY 57.3(2015):284-299.

条目包含的文件
文件名称/大小	文献类型	版本类型	开放类型	使用许可
JIPB - 2014 - Xu - P（3619KB）	期刊论文	出版稿	开放获取	CC BY-NC-SA	浏览请求全文