Knowledge Management System Of Institute Of Botany,CAS
| The genome sequence of the orchid Phalaenopsis equestris | |
Cai, Jing; Liu, Xin; Vanneste, Kevin7; Proost, Sebastian7; Tsai, Wen-Chieh; Liu, Ke-Wei; Chen, Li-Jun; He, Ying6,7; Xu, Qing; Bian, Chao; Zheng, Zhijun; Sun, Fengming; Liu, Weiqing; Hsiao, Yu-Yun; Pan, Zhao-Jun; Hsu, Chia-Chi; Yang, Ya-Ping; Hsu, Yi-Chin; Chuang, Yu-Chen; Dievart, Anne; Dufayard, Jean-Francois; Xu, Xun; Wang, Jun-Yi; Wang, Jun5; Xiao, Xin-Ju; Zhao, Xue-Min; Du, Rong12; Zhang, Guo-Qiang; Wang, Meina; Su, Yong-Yu; Xie, Gao-Chang; Liu, Guo-Hui; Li, Li-Qiang; Huang, Lai-Qiang; Luo, Yi-Bo ; Chen, Hong-Hwa; Van de Peer, Yves6,7,15; Liu, Zhong-Jian
| |
| 2015 | |
| 发表期刊 | NATURE GENETICS
 |
| ISSN | 1061-4036 |
| 卷号 | 47期号:1页码:65+ |
| 摘要 | Orchidaceae, renowned for its spectacular flowers and other reproductive and ecological adaptations, is one of the most diverse plant families. Here we present the genome sequence of the tropical epiphytic orchid Phalaenopsis equestris, a frequently used parent species for orchid breeding. P. equestris is the first plant with crassulacean acid metabolism (CAM) for which the genome has been sequenced. Our assembled genome contains 29,431 predicted protein-coding genes. We find that contigs likely to be underassembled, owing to heterozygosity, are enriched for genes that might be involved in self-incompatibility pathways. We find evidence for an orchid-specific paleopolyploidy event that preceded the radiation of most orchid clades, and our results suggest that gene duplication might have contributed to the evolution of CAM photosynthesis in P. equestris. Finally, we find expanded and diversified families of MADS-box C/D-class, B-class AP3 and AGL6-class genes, which might contribute to the highly specialized morphology of orchid flowers. |
| 学科领域 | Genetics & Heredity |
| DOI | 10.1038/ng.3149 |
| 收录类别 | SCI |
| 语种 | 英语 |
| WOS关键词 | CRASSULACEAN ACID METABOLISM ; MADS-BOX GENE ; MOLECULAR PHYLOGENETICS ; PLANT ; IDENTIFICATION ; DUPLICATIONS ; POLYPLOIDY ; EPIPHYTISM ; EVOLUTION ; PROGRAM |
| WOS研究方向 | Science Citation Index Expanded (SCI-EXPANDED) |
| WOS记录号 | WOS:000346990400013 |
| 出版者 | NATURE RESEARCH |
| 文献子类 | Article |
| 出版地 | BERLIN |
| EISSN | 1546-1718 |
| 资助机构 | 948 Program of the State Forestry Administration (China) [2011-4-53] ; Shenzhen Municipal Science AMP ; Technology Programs for Building State and Shenzhen Key Laboratories [2006464, 200712, CXB201005260070A] ; Youth Talent Fund of the Shenzhen municipal government [JC201005310690A] ; Ghent University ; European Union [322739-DOUBLE-UP] ; Hercules Foundation ; Flemish Government Department of Economy, Science and Innovation |
| 作者邮箱 | huanglq@mail.tsinghua.edu.cn ; luoyb@ibcas.ac.cn ; hhchen@mail.ncku.edu.tw ; yves.vandepeer@psb.vib-ugent.be ; liuzj@sinicaorchid.org |
| 作品OA属性 | Green Published, hybrid |
| 引用统计 | |
| 文献类型 | 期刊论文 |
| 条目标识符 | http://ir.ibcas.ac.cn/handle/2S10CLM1/25866 |
| 专题 | 系统与进化植物学国家重点实验室 |
| 作者单位 | 1.Natl Orchid Conservat Ctr China, Shenzhen Key Lab Orchid Conservat & Utilizat, Shenzhen, Peoples R China 2.Orchid Conservat & Res Ctr Shenzhen, Shenzhen, Peoples R China 3.Tsinghua Univ, Grad Sch Shenzhen, State Key Lab Hlth Sci & Technol, Ctr Biotechnol & BioMed,Shenzhen Key Lab Gene & A, Shenzhen 518057, Peoples R China 4.Tsinghua Univ, Grad Sch Shenzhen, Div Life & Hlth Sci, Shenzhen 518057, Peoples R China 5.Tsinghua Univ, Sch Life Sci, Beijing 100084, Peoples R China 6.BGI Shenzhen, Shenzhen, Peoples R China 7.VIB, Dept Plant Syst Biol, Ghent, Belgium 8.Univ Ghent, Dept Plant Biotechnol & Bioinformat, B-9000 Ghent, Belgium 9.Natl Cheng Kung Univ, Inst Trop Plant Sci, Tainan 70101, Taiwan 10.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing, Peoples R China 11.Natl Cheng Kung Univ, Dept Life Sci, Tainan 70101, Taiwan 12.Ctr Cooprat Int Rech Agronom Dev CIRAD, UMR Ameliorat Genet & Adaptat Plantes Mediterrane, Montpellier, France 13.State Forestry Adm, Beijing, Peoples R China 14.South China Agr Univ, Coll Forestry, Guangzhou, Guangdong, Peoples R China 15.Natl Cheng Kung Univ, Orchid Res Ctr, Tainan 70101, Taiwan 16.Genom Res Inst, Dept Genet, Pretoria, South Africa |
| 推荐引用方式 GB/T 7714 | Cai, Jing,Liu, Xin,Vanneste, Kevin,et al. The genome sequence of the orchid Phalaenopsis equestris[J]. NATURE GENETICS,2015,47(1):65+. |
| APA | Cai, Jing.,Liu, Xin.,Vanneste, Kevin.,Proost, Sebastian.,Tsai, Wen-Chieh.,...&Liu, Zhong-Jian.(2015).The genome sequence of the orchid Phalaenopsis equestris.NATURE GENETICS,47(1),65+. |
| MLA | Cai, Jing,et al."The genome sequence of the orchid Phalaenopsis equestris".NATURE GENETICS 47.1(2015):65+. |
| 条目包含的文件 | ||||||
| 文件名称/大小 | 文献类型 | 版本类型 | 开放类型 | 使用许可 | ||
| Cai-2015-The genome （1195KB） | 期刊论文 | 出版稿 | 开放获取 | CC BY-NC-SA | 浏览 请求全文 | |
除非特别说明，本系统中所有内容都受版权保护，并保留所有权利。
修改评论