Knowledge Management System Of Institute Of Botany,CAS
| The Complete Chloroplast Genome of Guadua angustifolia and Comparative Analyses of Neotropical-Paleotropical Bamboos | |
| Wu, Miaoli; Lan, Siren; Cai, Bangping1; Chen, Shipin; Chen, Hui; Zhou, Shiliang2 | |
| 2015 | |
| 发表期刊 | PLOS ONE
 |
| ISSN | 1932-6203 |
| 卷号 | 10期号:12 |
| 摘要 | To elucidate chloroplast genome evolution within neotropical-paleotropical bamboos, we fully characterized the chloroplast genome of the woody bamboo Guadua angustifolia. This genome is 135,331 bp long and comprises of an 82,839-bp large single-copy (LSC) region, a 12,898-bp small single-copy (SSC) region, and a pair of 19,797-bp inverted repeats (IRs). Comparative analyses revealed marked conservation of gene content and sequence evolutionary rates between neotropical and paleotropical woody bamboos. The neotropical herbaceous bamboo Cryptochloa strictiflora differs from woody bamboos in IR/SSC boundaries in that it exhibits slightly contracted IRs and a faster substitution rate. The G. angustifolia chloroplast genome is similar in size to that of neotropical herbaceous bamboos but is similar to 3 kb smaller than that of paleotropical woody bamboos. Dissimilarities in genome size are correlated with differences in the lengths of intergenic spacers, which are caused by large-fragment insertion and deletion. Phylogenomic analyses of 62 taxa yielded a tree topology identical to that found in preceding studies. Divergence time estimation suggested that most bamboo genera diverged after the Miocene and that speciation events of extant species occurred during or after the Pliocene. |
| 学科领域 | Multidisciplinary Sciences |
| DOI | 10.1371/journal.pone.0143792 |
| 收录类别 | SCI |
| 语种 | 英语 |
| WOS关键词 | PHYLOGENETIC ANALYSIS ; PLASTID GENOMES ; GRASSES POACEAE ; RELATIVE RATES ; WOODY BAMBOOS ; LIFE-HISTORY ; EVOLUTION ; BAMBUSOIDEAE ; SEQUENCE ; BIOGEOGRAPHY |
| WOS研究方向 | Science Citation Index Expanded (SCI-EXPANDED) |
| WOS记录号 | WOS:000365926300099 |
| 出版者 | PUBLIC LIBRARY SCIENCE |
| 文献子类 | Article |
| 出版地 | SAN FRANCISCO |
| 资助机构 | Forestry Discipline Construction Fund of Fujian Agriculture and Forestry University |
| 作者邮箱 | zjchchenh@163.com ; slzhou@ibcas.ac.cn |
| 作品OA属性 | Green Submitted, Green Published, gold |
| 引用统计 | |
| 文献类型 | 期刊论文 |
| 条目标识符 | http://ir.ibcas.ac.cn/handle/2S10CLM1/25994 |
| 专题 | 系统与进化植物学国家重点实验室 |
| 作者单位 | 1.Fujian Agr & Forestry Univ, Coll Forestry, Fuzhou 350002, Fujian, Peoples R China 2.Xiamen Bot Garden, Xiamen 361000, Fujian, Peoples R China 3.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China |
| 推荐引用方式 GB/T 7714 | Wu, Miaoli,Lan, Siren,Cai, Bangping,et al. The Complete Chloroplast Genome of Guadua angustifolia and Comparative Analyses of Neotropical-Paleotropical Bamboos[J]. PLOS ONE,2015,10(12). |
| APA | Wu, Miaoli,Lan, Siren,Cai, Bangping,Chen, Shipin,Chen, Hui,&Zhou, Shiliang.(2015).The Complete Chloroplast Genome of Guadua angustifolia and Comparative Analyses of Neotropical-Paleotropical Bamboos.PLOS ONE,10(12). |
| MLA | Wu, Miaoli,et al."The Complete Chloroplast Genome of Guadua angustifolia and Comparative Analyses of Neotropical-Paleotropical Bamboos".PLOS ONE 10.12(2015). |
| 条目包含的文件 | ||||||
| 文件名称/大小 | 文献类型 | 版本类型 | 开放类型 | 使用许可 | ||
| Wu-2015-The Complete（1234KB） | 期刊论文 | 出版稿 | 开放获取 | CC BY-NC-SA | 浏览 请求全文 | |
除非特别说明，本系统中所有内容都受版权保护，并保留所有权利。
修改评论