NDH expression marks major transitions in plant evolution and reveals coordinate intracellular gene loss

doi:10.1186/s12870-015-0484-7

	NDH expression marks major transitions in plant evolution and reveals coordinate intracellular gene loss
	Ruhlman, Tracey A.; Chang, Wan-Jung ; Chen, Jeremy J. W.; Huang, Yao-Ting ; Chan, Ming-Tsair ; Zhang, Jin ; Liao, De-Chih ; Blazier, John C.; Jin, Xiaohua4 ; Shih, Ming-Che ; Jansen, Robert K.; Lin, Choun-Sea
	2015
发表期刊	BMC PLANT BIOLOGY
ISSN	1471-2229
卷号	15
摘要	Background: Key innovations have facilitated novel niche utilization, such as the movement of the algal predecessors of land plants into terrestrial habitats where drastic fluctuations in light intensity, ultraviolet radiation and water limitation required a number of adaptations. The NDH (NADH dehydrogenase-like) complex of Viridiplantae plastids participates in adapting the photosynthetic response to environmental stress, suggesting its involvement in the transition to terrestrial habitats. Although relatively rare, the loss or pseudogenization of plastid NDH genes is widely distributed across diverse lineages of photoautotrophic seed plants and mutants/transgenics lacking NDH function demonstrate little difference from wild type under non-stressed conditions. This study analyzes large transcriptomic and genomic datasets to evaluate the persistence and loss of NDH expression across plants. Results: Nuclear expression profiles showed accretion of the NDH gene complement at key transitions in land plant evolution, such as the transition to land and at the base of the angiosperm lineage. While detection of transcripts for a selection of non-NDH, photosynthesis related proteins was independent of the state of NDH, coordinate, lineage-specific loss of plastid NDH genes and expression of nuclear-encoded NDH subunits was documented in Pinaceae, gnetophytes, Orchidaceae and Geraniales confirming the independent and complete loss of NDH in these diverse seed plant taxa. Conclusion: The broad phylogenetic distribution of NDH loss and the subtle phenotypes of mutants suggest that the NDH complex is of limited biological significance in contemporary plants. While NDH activity appears dispensable under favorable conditions, there were likely sufficiently frequent episodes of abiotic stress affecting terrestrial habitats to allow the retention of NDH activity. These findings reveal genetic factors influencing plant/environment interactions in a changing climate through 450 million years of land plant evolution.
关键词	Streptophyta NAD(P)H dehydrogenase Transcriptomics Cyclic electron flow Sig4
学科领域	Plant Sciences
DOI	10.1186/s12870-015-0484-7
收录类别	SCI
语种	英语
WOS关键词	DEHYDROGENASE-LIKE COMPLEX ; CYCLIC ELECTRON FLOW ; PHOTOSYSTEM-I ; NADH DEHYDROGENASE ; NAD(P)H DEHYDROGENASE ; EXTANT GYMNOSPERMS ; CHLOROPLAST GENOME ; SEED PLANTS ; HISTORICAL BIOGEOGRAPHY ; SUPERCOMPLEX FORMATION
WOS研究方向	Science Citation Index Expanded (SCI-EXPANDED)
WOS记录号	WOS:000353266600001
出版者	BIOMED CENTRAL LTD
文献子类	Article
出版地	LONDON
资助机构	National Science Foundation [IOS-1027259] ; Innovative Translational Agricultural Research Administrative Office
作者邮箱	cslin99@gate.sinica.edu.tw
作品OA属性	Green Published, gold
引用统计	被引频次：76[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.ibcas.ac.cn/handle/2S10CLM1/26031
专题	系统与进化植物学国家重点实验室
作者单位	1.[Ruhlman, Tracey A.; Zhang, Jin; Blazier, John C.; Jansen, Robert K.] Univ Texas Austin, Dept Integrat Biol, Austin, TX 78712 USA 2.Acad Sinica, Agr Biotechnol Res Ctr, Taipei 115, Taiwan 3.Chen, Jeremy J. W.] Natl Chung Hsing Univ, Inst Biomed Sci, Taichung 40227, Taiwan 4.Natl Chung Cheng Univ, Dept Comp Sci & Informat Engn, Chiayi, Taiwan 5.Chinese Acad Sci, Inst Bot, Beijing 100093, Peoples R China 6.Jansen, Robert K.] King Abdulaziz Univ, Biotechnol Res Grp, Dept Biol Sci, Jeddah 21589, Saudi Arabia
推荐引用方式 GB/T 7714	Ruhlman, Tracey A.,Chang, Wan-Jung,Chen, Jeremy J. W.,et al. NDH expression marks major transitions in plant evolution and reveals coordinate intracellular gene loss[J]. BMC PLANT BIOLOGY,2015,15.
APA	Ruhlman, Tracey A..,Chang, Wan-Jung.,Chen, Jeremy J. W..,Huang, Yao-Ting.,Chan, Ming-Tsair.,...&Lin, Choun-Sea.(2015).NDH expression marks major transitions in plant evolution and reveals coordinate intracellular gene loss.BMC PLANT BIOLOGY,15.
MLA	Ruhlman, Tracey A.,et al."NDH expression marks major transitions in plant evolution and reveals coordinate intracellular gene loss".BMC PLANT BIOLOGY 15(2015).

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