Plant 3D Chromatin Organization: Important Insights from Chromosome Conformation Capture Analyses of the Last 10 Years

doi:10.1093/pcp/pcab134

	Plant 3D Chromatin Organization: Important Insights from Chromosome Conformation Capture Analyses of the Last 10 Years
	Zhang, Xinxin 1; Wang, Tianzuo 1,2
	2021
发表期刊	PLANT AND CELL PHYSIOLOGY
ISSN	0032-0781
卷号	62 期号:11 页码:1648-1661
摘要	Over the past few decades, eukaryotic linear genomes and epigenomes have been widely and extensively studied for understanding gene expression regulation. More recently, the three-dimensional (3D) chromatin organization was found to be important for determining genome functionality, finely tuning physiological processes for appropriate cellular responses. With the development of visualization techniques and chromatin conformation capture (3C)-based techniques, increasing evidence indicates that chromosomal architecture characteristics and chromatin domains with different epigenetic modifications in the nucleus are correlated with transcriptional activities. Subsequent studies have further explored the intricate interplay between 3D genome organization and the function of interacting regions. In this review, we summarize spatial distribution patterns of chromatin, including chromatin positioning, configurations and domains, with a particular focus on the effect of a unique form of interaction between varieties of factors that shape the 3D genome conformation in plants. We further discuss the methods, advantages and limitations of various 3C-based techniques, highlighting the applications of these technologies in plants to identify chromatin domains, and address their dynamic changes and functional implications in evolution, and adaptation to development and changing environmental conditions. Moreover, the future implications and emerging research directions of 3D genome organization are discussed.
关键词	Chromatin conformation capture (3C)-based techniques Chromatin positioning Configurations Domains Genome structures Three-dimensional (3D) chromatin organization
学科领域	Plant Sciences ; Cell Biology
DOI	10.1093/pcp/pcab134
收录类别	SCI
语种	英语
WOS关键词	GENOME-WIDE ANALYSIS ; INTERPHASE CHROMOSOMES ; ARABIDOPSIS-THALIANA ; TRANSCRIPTION SITES ; PHASE-SEPARATION ; X-CHROMOSOME ; GENE LOOP ; ARCHITECTURE ; DOMAINS ; REVEALS
WOS研究方向	Science Citation Index Expanded (SCI-EXPANDED)
WOS记录号	WOS:000734079300002
出版者	OXFORD UNIV PRESS
文献子类	Review
出版地	OXFORD
EISSN	1471-9053
资助机构	National Natural Science Foundation of China [32070351] ; Science and Technology Program of Inner Mongolia [2021GG0372]
作者邮箱	tzwang@ibcas.ac.cn
作品OA属性	Green Published, hybrid
引用统计	被引频次：8[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.ibcas.ac.cn/handle/2S10CLM1/26357
专题	植被与环境变化国家重点实验室
作者单位	1.Peking Univ, Peking Tsinghua Ctr Life Sci, Sch Adv Agr Sci & Sch Life Sci, State Key Lab Prot & Plant Gene Res, Beijing 100871, Peoples R China 2.Chinese Acad Sci, Inst Bot, State Key Lab Vegetat & Environm Change, Beijing 100093, Peoples R China 3.Univ Chinese Acad Sci, Coll Resources & Environm, Beijing 100093, Peoples R China
推荐引用方式 GB/T 7714	Zhang, Xinxin,Wang, Tianzuo. Plant 3D Chromatin Organization: Important Insights from Chromosome Conformation Capture Analyses of the Last 10 Years[J]. PLANT AND CELL PHYSIOLOGY,2021,62(11):1648-1661.
APA	Zhang, Xinxin,&Wang, Tianzuo.(2021).Plant 3D Chromatin Organization: Important Insights from Chromosome Conformation Capture Analyses of the Last 10 Years.PLANT AND CELL PHYSIOLOGY,62(11),1648-1661.
MLA	Zhang, Xinxin,et al."Plant 3D Chromatin Organization: Important Insights from Chromosome Conformation Capture Analyses of the Last 10 Years".PLANT AND CELL PHYSIOLOGY 62.11(2021):1648-1661.

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