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NOVOWrap: An automated solution for plastid genome assembly and structure standardization
Wu, Ping1; Chen, Hao; Xu, Chao2; Yang, Jie1; Zhang, Xian Chun1; Zhou, Shi Liang1
2021
发表期刊MOLECULAR ECOLOGY RESOURCES
ISSN1755-098X
卷号21期号:6页码:2177-2186
摘要Plastid genomes play an important role in genomics and evolutionary biology. Next-generation sequencing has revolutionized plastid genomic data acquisition to the point that genome assembly has become a bottleneck for widespread utilization of plastid genome data. To solve this problem, we developed an open-source, cross-platform tool known as, NOVOWrap, which includes both command-line and graphical interfaces for automatically assembling plastid genomes on personal computers. With minimal inputs, settings, and user intervention, NOVOWrap can automatically assemble plastid genomes, validate results and standardize the structure using affordable computer resources. The performance of this software has been successfully benchmarked against the plastid genomes of 11 species belonging to lycopods, gymnosperms, and angiosperms. By liberating researchers from laborious and cumbersome computer manipulations and create reliable and standardized genomic data, NOVOWrap is expected to accelerate plastid genome assembly, ease the process of data exchange, and contribute to downstream analysis.
关键词assembly plastid genome standardized structure
学科领域Biochemistry & Molecular Biology ; Ecology ; Evolutionary Biology
DOI10.1111/1755-0998.13410
收录类别SCI
语种英语
WOS关键词CHLOROPLAST GENOME ; INVERTED REPEAT ; EXPANSION ; RATES
WOS研究方向Science Citation Index Expanded (SCI-EXPANDED)
WOS记录号WOS:000653966300001
出版者WILEY
文献子类Article
出版地HOBOKEN
EISSN1755-0998
资助机构National Natural Science Foundation of China [31872679] ; Strategic Priority Research Program of Chinese Academy of Sciences [XDA19050303, XDA23080204]
作者邮箱slzhou@ibcas.ac.cn
作品OA属性Green Submitted
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被引频次:16[WOS]   [WOS记录]     [WOS相关记录]
文献类型期刊论文
条目标识符http://ir.ibcas.ac.cn/handle/2S10CLM1/26394
专题系统与进化植物学国家重点实验室
作者单位1.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing, Peoples R China
2.Univ Chinese Acad Sci, Beijing, Peoples R China
3.Shaanxi Univ Sci & Technol, Xian, Peoples R China
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Wu, Ping,Chen, Hao,Xu, Chao,et al. NOVOWrap: An automated solution for plastid genome assembly and structure standardization[J]. MOLECULAR ECOLOGY RESOURCES,2021,21(6):2177-2186.
APA Wu, Ping,Chen, Hao,Xu, Chao,Yang, Jie,Zhang, Xian Chun,&Zhou, Shi Liang.(2021).NOVOWrap: An automated solution for plastid genome assembly and structure standardization.MOLECULAR ECOLOGY RESOURCES,21(6),2177-2186.
MLA Wu, Ping,et al."NOVOWrap: An automated solution for plastid genome assembly and structure standardization".MOLECULAR ECOLOGY RESOURCES 21.6(2021):2177-2186.
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