The Amborella Genome and the Evolution of Flowering Plants

doi:10.1126/science.1241089

	The Amborella Genome and the Evolution of Flowering Plants
	Albert, Victor A.; Barbazuk, W. Bradley ; dePamphilis, Claude W.; Der, Joshua P.; Leebens-Mack, James ; Ma, Hong 8,9; Palmer, Jeffrey D.; Rounsley, Steve 13; Sankoff, David 14; Schuster, Stephan C.; Soltis, Douglas E.; Soltis, Pamela S.; Wessler, Susan R.; Wing, Rod A.; Albert, Victor A.; Ammiraju, Jetty S. S.; Barbazuk, W. Bradley ; Chamala, Srikar ; Chanderbali, Andre S.; dePamphilis, Claude W.; Der, Joshua P.; Determann, Ronald 20; Leebens-Mack, James ; Ma, Hong 8,9; Ralph, Paula ; Rounsley, Steve 13; Schuster, Stephan C.; Soltis, Douglas E.; Soltis, Pamela S.; Talag, Jason 11,12,19; Tomsho, Lynn 15; Walts, Brandon 1; Wanke, Stefan 21; Wing, Rod A.; Albert, Victor A.; Barbazuk, W. Bradley ; Chamala, Srikar ; Chanderbali, Andre S.; Chang, Tien-Hao ; Determann, Ronald 20; Lan, Tianying 22; Soltis, Douglas E.; Soltis, Pamela S.; Arikit, Siwaret ; Axtell, Michael J.; Ayyampalayam, Saravanaraj ; Barbazuk, W. Bradley ; Burnette, James M., III ; Chamala, Srikar ; De Paoli, Emanuele 24; dePamphilis, Claude W.; Der, Joshua P.; Estill, James C.; Farrell, Nina P.; Harkess, Alex 7; Jiao, Yuannian; Leebens-Mack, James ; Liu, Kun 18; Mei, Wenbin 1; Meyers, Blake C.; Shahid, Saima ; Wafula, Eric ; Walts, Brandon 1; Wessler, Susan R.; Zhai, Jixian 23; Zhang, Xiaoyu 7; Albert, Victor A.; Carretero-Paulet, Lorenzo ; dePamphilis, Claude W.; Der, Joshua P.; Jiao, Yuannian; Leebens-Mack, James ; Lyons, Eric 11,12,25; Sankoff, David 14; Tang, Haibao 26; Wafula, Eric ; Zheng, Chunfang 14; Albert, Victor A.; Altman, Naomi S.; Barbazuk, W. Bradley ; Carretero-Paulet, Lorenzo ; dePamphilis, Claude W.; Der, Joshua P.; Estill, James C.; Jiao, Yuannian; Leebens-Mack, James ; Liu, Kun 18; Mei, Wenbin 1; Wafula, Eric ; Altman, Naomi S.; Arikit, Siwaret ; Axtell, Michael J.; Chamala, Srikar ; Chanderbali, Andre S.; Chen, Feng 28; Chen, Jian-Qun ; Chiang, Vincent 30; De Paoli, Emanuele 24; dePamphilis, Claude W.; Der, Joshua P.; Determann, Ronald 20; Fogliani, Bruno 32; Guo, Chunce 33; Harholt, Jesper 34; Harkess, Alex 7; Job, Claudette 35; Job, Dominique 35; Kim, Sangtae 36,37; Kong, Hongzhi33 ; Leebens-Mack, James ; Li, Guanglin 28; Li, Lin 33; Liu, Jie 30; Ma, Hong 8,9; Meyers, Blake C.; Park, Jongsun 36,37; Qi, Xinshuai 1,38,39; Rajjou, Loic 40; Burtet-Sarramegna, Valerie ; Sederoff, Ron 30; Shahid, Saima ; Soltis, Douglas E.; Soltis, Pamela S.; Sun, Ying-Hsuan ; Ulvskov, Peter 34; Villegente, Matthieu 31; Xue, Jia-Yu ; Yeh, Ting-Feng ; Yu, Xianxian 33; Zhai, Jixian 23; Acosta, Juan J.; Albert, Victor A.; Barbazuk, W. Bradley ; Bruenn, Riva A.; Chamala, Srikar ; de Kochko, Alexandre 45; dePamphilis, Claude W.; Der, Joshua P.; Herrera-Estrella, Luis R.; Ibarra-Laclette, Enrique ; Kirst, Matias 2,43; Leebens-Mack, James ; Pissis, Solon P.; Poncet, Valerie 45; Schuster, Stephan C.; Soltis, Douglas E.; Soltis, Pamela S.; Tomsho, Lynn 15
	2013
发表期刊	SCIENCE
ISSN	0036-8075
卷号	342 期号:6165 页码:1467+
摘要	Amborella trichopoda is strongly supported as the single living species of the sister lineage to all other extant flowering plants, providing a unique reference for inferring the genome content and structure of the most recent common ancestor (MRCA) of living angiosperms. Sequencing the Amborella genome, we identified an ancient genome duplication predating angiosperm diversification, without evidence of subsequent, lineage-specific genome duplications. Comparisons between Amborella and other angiosperms facilitated reconstruction of the ancestral angiosperm gene content and gene order in the MRCA of core eudicots. We identify new gene families, gene duplications, and floral protein-protein interactions that first appeared in the ancestral angiosperm. Transposable elements in Amborella are ancient and highly divergent, with no recent transposon radiations. Population genomic analysis across Amborella's native range in New Caledonia reveals a recent genetic bottleneck and geographic structure with conservation implications.
学科领域	Multidisciplinary Sciences
DOI	10.1126/science.1241089
收录类别	SCI
语种	英语
WOS关键词	BOX GENE FAMILY ; WIDE ANALYSIS ; PHYLOGENETIC ANALYSIS ; EARLY DIVERSIFICATION ; 11S GLOBULIN ; ARABIDOPSIS ; EXPRESSION ; ANNOTATION ; REGULATORS ; SEQUENCE
WOS研究方向	Science Citation Index Expanded (SCI-EXPANDED)
WOS记录号	WOS:000328644300047
出版者	AMER ASSOC ADVANCEMENT SCIENCE
文献子类	Article
出版地	WASHINGTON
EISSN	1095-9203
资助机构	NSF Plant Genome Research Program(National Science Foundation (NSF)NSF - Office of the Director (OD)) ; NSF(National Science Foundation (NSF)) ; Division Of Integrative Organismal Systems ; Direct For Biological Sciences(National Science Foundation (NSF)NSF - Directorate for Biological Sciences (BIO))
作者邮箱	Jiao, Yuannian/AAZ-7054-2021 ; Wing, Rod A/Z-2885-2019 ; Wanke, Stefan/G-5860-2011 ; Leebens-Mack, James/AAF-6770-2019 ; Kong, Hongzhi/B-1784-2012 ; Soltis, Pamela S/GNH-5557-2022 ; Harholt, Jesper/F-6865-2014 ; Pissis, Solon P/HPH-8471-2023 ; Der, Joshua P/F-9551-2012 ; Tang, Haibao/A-6715-2011 ; Soltis, Pamela S/L-5184-2015 ; Herrera-Estrella, Luis/ABC-7431-2020 ; Zhai, Jixian/HCH-9272-2022 ; Carretero-Paulet, Lorenzo/Z-2744-2019 ; zhang, xiaoyu/HJI-4374-2023 ; de Kochko, Alexandre/C-7512-2009 ; Zhang, xiaoyu/GXA-3206-2022 ; Soltis, Douglas/L-5957-2015 ; Ulvskov, Peter/I-1228-2014 ; Poncet, Valérie/AGG-5592-2022 ; Palmer, Jeffrey/P-6747-2014 ; Poncet, Valerie/A-9038-2011 ; Qi, Xinshuai/E-8538-2017 ; Herrera-Estrella, Luis/AAL-2472-2020 ; shahid, saima/GXV-9647-2022 ; Ma, Hong/W-5251-2018 ; Meyers, Blake/B-6535-2012 ; dePamphilis, Claude W/P-6652-2016
引用统计	被引频次：531[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.ibcas.ac.cn/handle/2S10CLM1/27846
专题	系统与进化植物学国家重点实验室
作者单位	1.SUNY Buffalo, Dept Biol Sci, Buffalo, NY 14260 USA 2.Univ Florida, Dept Biol, Gainesville, FL 32611 USA 3.Univ Florida, Genet Inst, Gainesville, FL 32610 USA 4.dePamphilis, Claude W.; Der, Joshua P.; Ma, Hong; Ralph, Paula; Axtell, Michael J.; Farrell, Nina P.; Jiao, Yuannian; Wafula, Eric; dePamphilis, Claude W.; Bruenn, Riva A.] Penn State Univ, Dept Biol, University Pk, PA 16802 USA 5.dePamphilis, Claude W.; Ma, Hong; Ralph, Paula; Farrell, Nina P.; Bruenn, Riva A.] Penn State Univ, Huck Inst Life Sci, University Pk, PA 16802 USA 6.Shahid, Saima; dePamphilis, Claude W.] Penn State Univ, Intercoll Plant Biol Grad Program, University Pk, PA 16802 USA 7.dePamphilis, Claude W.; Schuster, Stephan C.; dePamphilis, Claude W.] Penn State Univ, Ctr Comparat Genom & Bioinformat, University Pk, PA 16802 USA 8.Univ Georgia, Dept Plant Biol, Athens, GA 30602 USA 9.Fudan Univ, Sch Life Sci, State Key Lab Genet Engn, Shanghai 200433, Peoples R China 10.Fudan Univ, Inst Genet, Inst Plant Biol, Ctr Evolutionary Biol,Inst Biomed Sci, Shanghai 200433, Peoples R China 11.Palmer, Jeffrey D.] Indiana Univ, Dept Biol, Bloomington, IN 47405 USA 12.Univ Arizona, Sch Biol Sci, Tucson, AZ 85721 USA 13.Univ Arizona, Inst Collaborat Res BIO5, Tucson, AZ 85721 USA 14.Dow AgroSci, Indianapolis, IN 46268 USA 15.Univ Ottawa, Dept Math & Stat, Ottawa, ON K1N 6N5, Canada 16.Penn State Univ, Dept Biochem & Mol Biol, University Pk, PA 16802 USA 17.Schuster, Stephan C.] Singapore Ctr Environm Life Sci Engn, Singapore, Singapore 18.Soltis, Douglas E.; Soltis, Pamela S.; Pissis, Solon P.] Univ Florida, Florida Museum Nat Hist, Gainesville, FL 32611 USA 19.Univ Calif Riverside, Dept Bot & Plant Sci, Riverside, CA 92521 USA 20.Univ Arizona, Arizona Genom Inst, Tucson, AZ 85721 USA 21.Atlanta Bot Garden, Atlanta, GA 30309 USA 22.Tech Univ Dresden, Inst Bot, D-01062 Dresden, Germany 23.Chongqing Univ Sci & Technol, Dept Biol, Chongqing 4000042, Peoples R China 24.Univ Delaware, Delaware Biotechnol Inst, Newark, DE 19711 USA 25.Univ Udine, Dipartimento Sci Agr & Ambientali, I-33100 Udine, Italy; Univ Georgia, Plant Genome Mapping Lab, Athens, GA 30602 USA 26.Univ Arizona, iPlant Collaborat, Tucson, AZ 85721 USA 27.J Craig Venter Inst, Rockville, MD 20850 USA 28.Altman, Naomi S.] Penn State Univ, Dept Stat, University Pk, PA 16802 USA 29.Univ Tennessee, Dept Plant Sci, Knoxville, TN 37996 USA 30.Nanjing Univ, Sch Life Sci, Nanjing 210093, Jiangsu, Peoples R China 31.N Carolina State Univ, Dept Forestry & Environm Resources, Raleigh, NC 27695 USA 32.Univ New Caledonia, Lab Insulaire Vivant & Environm, Noumea 98851, New Caledonia 33.Inst Agron Neo Caledonien IAC, Paita 98890, New Caledonia 34.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China 35.Univ Copenhagen, Dept Plant & Environm Sci, DK-1871 Frederiksberg C, Denmark 36.Univ Claude Bernard Lyon, Inst Natl Sci Appl Bayer CropSci Joint Lab UMR524, CNRS, Bayer CropSci, F-69263 Lyon 9, France 37.Sungshin Womens Univ, Sch Biol Sci & Chem, Seoul 142732, South Korea 38.Sungshin Womens Univ, Basic Sci Res Inst, Seoul 142732, South Korea 39.Zhejiang Univ, Coll Life Sci, Key Lab Conservat Biol Endangered Wildlife, Minist Educ, Hangzhou 310058, Zhejiang, Peoples R China 40.Zhejiang Univ, Coll Life Sci, Lab Systemat & Evolutionary Bot & Biodivers, Hangzhou 310058, Zhejiang, Peoples R China 41.INRA AgroParisTech, Jean Pierre Bourgin Inst IJPB, UMR1318, Lab Excellence Saclay Plant Sci LabEx SPS, F-78026 Versailles, France 42.Natl Chung Hsing Univ, Dept Forestry, Taichung 40227, Taiwan 43.Natl Taiwan Univ, Sch Forestry & Resource Conservat, Taipei 10617, Taiwan 44.Univ Florida, Sch Forest Resources & Conservat, Gainesville, FL 32611 USA 45.Bruenn, Riva A.] Univ Calif Berkeley, Dept Plant & Microbial Biol, Berkeley, CA 94720 USA 46.IRD, UMR Diversite Adaptat & Dev Plantes DIADE, F-34394 Montpellier 5, France 47.Lab Nacl Genom Biodiversidad, Irapuato 36821, Mexico 48.Pissis, Solon P.] Heidelberg Inst Theoret Studies, Sci Comp Grp, D-69118 Heidelberg, Germany
推荐引用方式 GB/T 7714	Albert, Victor A.,Barbazuk, W. Bradley,dePamphilis, Claude W.,et al. The Amborella Genome and the Evolution of Flowering Plants[J]. SCIENCE,2013,342(6165):1467+.
APA	Albert, Victor A..,Barbazuk, W. Bradley.,dePamphilis, Claude W..,Der, Joshua P..,Leebens-Mack, James.,...&Tomsho, Lynn.(2013).The Amborella Genome and the Evolution of Flowering Plants.SCIENCE,342(6165),1467+.
MLA	Albert, Victor A.,et al."The Amborella Genome and the Evolution of Flowering Plants".SCIENCE 342.6165(2013):1467+.

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