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| The Capsella rubella genome and the genomic consequences of rapid mating system evolution | |
Slotte, Tanja1,2; Hazzouri, Khaled M.; Agren, J. Arvid; Koenig, Daniel; Maumus, Florian5; Guo, Ya-Long ; Steige, Kim1; Platts, Adrian E.; Escobar, Juan S.; Newman, L. Killian; Wang, Wei; Mandakova, Terezie; Vello, Emilio7; Smith, Lisa M.; Henz, Stefan R.; Steffen, Joshua10; Takuno, Shohei12; Brandvain, Yaniv13; Coop, Graham13; Andolfatto, Peter; Hu, Tina T.; Blanchette, Mathieu16; Clark, Richard M.; Quesneville, Hadi5; Nordborg, Magnus17; Gaut, Brandon S.; Lysak, Martin A.; Jenkins, Jerry18; Grimwood, Jane18; Chapman, Jarrod19; Prochnik, Simon19; Shu, Shengqiang19; Rokhsar, Daniel19,20; Schmutz, Jeremy18,19; Weigel, Detlef4; Wright, Stephen I.
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| 2013 | |
| 发表期刊 | NATURE GENETICS
 |
| ISSN | 1061-4036 |
| 卷号 | 45期号:7页码:831+ |
| 摘要 | The shift from outcrossing to selfing is common in flowering plants(1,2), but the genomic consequences and the speed at which they emerge remain poorly understood. An excellent model for understanding the evolution of self fertilization is provided by Capsella rubella, which became self compatible <200,000 years ago. We report a C. rubella reference genome sequence and compare RNA expression and polymorphism patterns between C. rubella and its outcrossing progenitor Capsella grandiflora. We found a clear shift in the expression of genes associated with flowering phenotypes, similar to that seen in Arabidopsis, in which self fertilization evolved about 1 million years ago. Comparisons of the two Capsella species showed evidence of rapid genome-wide relaxation of purifying selection in C. rubella without a concomitant change in transposable element abundance. Overall we document that the transition to selfing may be typified by parallel shifts in gene expression, along with a measurable reduction of purifying selection. |
| 学科领域 | Genetics & Heredity |
| DOI | 10.1038/ng.2669 |
| 收录类别 | SCI |
| 语种 | 英语 |
| WOS关键词 | ARABIDOPSIS-THALIANA ; MOLECULAR EVOLUTION ; RECENT SPECIATION ; SEQUENCE ; EXPRESSION ; GENES ; GRANDIFLORA ; ANNOTATION ; MUTATIONS ; SOFTWARE |
| WOS研究方向 | Science Citation Index Expanded (SCI-EXPANDED) |
| WOS记录号 | WOS:000321005200022 |
| 出版者 | NATURE PUBLISHING GROUP |
| 文献子类 | Article |
| 出版地 | NEW YORK |
| EISSN | 1546-1718 |
| 资助机构 | Office of Science of the DoE(United States Department of Energy (DOE)) ; Max Planck Society(Max Planck SocietyFoundation CELLEX) ; Genome Quebec and Genome Canada VEGI grant ; Natural Sciences and Engineering Research Council of Canada (NSERC)(Natural Sciences and Engineering Research Council of Canada (NSERC)) ; Swedish Research Council(Swedish Research Council) ; Carl Trygger and Erik Philip-Sorensen foundations ; National Science Foundation (NSF)(National Science Foundation (NSF)) ; French National Research Agency(French National Research Agency (ANR)) ; Czech Science Foundation(Grant Agency of the Czech Republic) ; European Regional Development Fund(European Commission) ; Human Frontiers in Science Program Long-Term Fellowship ; Alfred P. Sloan Foundation(Alfred P. Sloan Foundation) ; Swedish National Infrastructure for Computing (SNIC) through the Uppsala Multidisciplinary Center for Advanced Computational Science UPPMAX) ; European Community(European Commission) ; EMBO Long-Term fellowship(European Molecular Biology Organization (EMBO)) ; Direct For Biological Sciences ; Division Of Integrative Organismal Systems(National Science Foundation (NSF)NSF - Directorate for Biological Sciences (BIO)) |
| 作者邮箱 | Grimwood, Jane/ABD-5737-2021 ; Maumus, Florian/O-5426-2016 ; Weigel, Detlef/C-1418-2008 ; Schmutz, Jeremy/N-3173-2013 ; Jenkins, Jerry/ABE-6479-2020 ; Lysak, Martin A/D-7177-2012 ; Quesneville, Hadi/AAG-1048-2020 ; Mandakova, Terezie/E-1365-2012 ; Weigel, Detlef/AAR-3312-2021 ; Escobar, Juan S/F-7234-2013 ; Weigel, Detlef/GSJ-0799-2022 ; Wright, Stephen I/C-3113-2008 ; Platts, Adrian E/H-5633-2013 ; Smith, Lisa/E-6506-2011 ; Guo, Yalong/G-4742-2011 |
| 作品OA属性 | hybrid |
| 引用统计 | |
| 文献类型 | 期刊论文 |
| 条目标识符 | http://ir.ibcas.ac.cn/handle/2S10CLM1/27861 |
| 专题 | 系统与进化植物学国家重点实验室 |
| 作者单位 | 1.[Slotte, Tanja; Hazzouri, Khaled M.; Agren, J. Arvid; Escobar, Juan S.; Newman, L. Killian; Wang, Wei; Wright, Stephen I.] Univ Toronto, Dept Ecol & Evolutionary Biol, Toronto, ON, Canada 2.Uppsala Univ, Dept Evolutionary Biol, Evolutionary Biol Ctr, Uppsala, Sweden 3.Uppsala Univ, Sci Life Lab, Uppsala, Sweden 4.Hazzouri, Khaled M.] New York Univ Abu Dhabi, Ctr Genom & Syst Biol, Abu Dhabi, U Arab Emirates 5.Max Planck Inst Dev Biol, Dept Biol Mol, Tubingen, Germany 6.INRA, Ctr Versailles Grignon, Unite Rech Genom Info, F-78026 Versailles, France 7.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing, Peoples R China 8.McGill Univ, Dept Biol, Montreal, PQ H3A 1B1, Canada 9.Mandakova, Terezie; Lysak, Martin A.] Masaryk Univ, Lab Plant Cytogen, Cent European Inst Technol CEITEC, Brno, Czech Republic 10.Steffen, Joshua; Clark, Richard M.] Univ Utah, Dept Biol, Salt Lake City, UT 84112 USA 11.Colby Sawyer Coll, Dept Nat Sci, New London, NH USA 12.Takuno, Shohei; Gaut, Brandon S.] Univ Calif Irvine, Dept Ecol & Evolutionary Biol, Irvine, CA 92717 USA 13.Univ Calif Davis, Dept Plant Sci, Davis, CA 95616 USA 14.Univ Calif Davis, Dept Ecol & Evolut, Davis, CA 95616 USA 15.Andolfatto, Peter; Hu, Tina T.] Princeton Univ, Dept Ecol & Evolutionary Biol, Princeton, NJ 08544 USA 16.Andolfatto, Peter; Hu, Tina T.] Princeton Univ, Lewis Sigler Inst Integrat Genom, Princeton, NJ 08544 USA 17.McGill Univ, Sch Comp Sci, Montreal, PQ, Canada 18.Austrian Acad Sci, Gregor Mendel Inst, A-1010 Vienna, Austria 19.HudsonAlpha Inst Biotechnol, Huntsville, AL USA 20.US DOE, Joint Genome Inst, Walnut Creek, CA USA 21.Univ Calif Berkeley, Ctr Integrat Genom, Berkeley, CA 94720 USA 22.Wright, Stephen I.] Univ Toronto, Ctr Anal Genome Evolut & Funct, Toronto, ON, Canada |
| 推荐引用方式 GB/T 7714 | Slotte, Tanja,Hazzouri, Khaled M.,Agren, J. Arvid,et al. The Capsella rubella genome and the genomic consequences of rapid mating system evolution[J]. NATURE GENETICS,2013,45(7):831+. |
| APA | Slotte, Tanja.,Hazzouri, Khaled M..,Agren, J. Arvid.,Koenig, Daniel.,Maumus, Florian.,...&Wright, Stephen I..(2013).The Capsella rubella genome and the genomic consequences of rapid mating system evolution.NATURE GENETICS,45(7),831+. |
| MLA | Slotte, Tanja,et al."The Capsella rubella genome and the genomic consequences of rapid mating system evolution".NATURE GENETICS 45.7(2013):831+. |
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| Slotte-2013-The Caps（1083KB） | 期刊论文 | 出版稿 | 开放获取 | CC BY-NC-SA | 浏览 请求全文 | |
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