Comprehensive analysis of NAC domain transcription factor gene family in Vitis vinifera

doi:10.1007/s00299-012-1340-y

	Comprehensive analysis of NAC domain transcription factor gene family in Vitis vinifera
	Wang, Nian 1; Zheng, Yu 1,2; Xin, Haiping ; Fang, Linchuan 2; Li, Shaohua
	2013
发表期刊	PLANT CELL REPORTS
ISSN	0721-7714
卷号	32 期号:1 页码:61-75
摘要	Genome-wide identification of grapevine NAC domain genes and investigation of their chromosome locations, gene structures, duplication, evolution, phylogeny and expression profiles. Grapevine is a widely used fruit crop. NAC (NAM, ATAF1/2 and CUC2) domain genes are plant-specific transcription factors (TFs) that comprise a conserved NAM domain in the N-terminus. Members of this gene family have been reported to contribute to plant development. During this study, 74 NAC genes were identified from 12x assembled grapevine genomic sequences. The duplication patterns, genomic structures and phylogeny of these 74 grapevine NAC genes were investigated. To understand the roles of VvNAC during grapevine development, their expression profiles in different tissues including leaf, tendril, inflorescence, stem, root and veraison berry skin were tested using quantitative real-time PCR. Analysis revealed expression diversity of various VvNAC genes among different grapevine tissues. To identify candidate grapevine NAC genes with a role in response to stress, publicly available microarray data were obtained to calculate their expression change under abiotic and biotic treatments, with a number of VvNAC genes displaying up-regulation after stress induction. Therefore, this study has uncovered more knowledge relating to the gene structures, chromosome organizations, evolution, expression profiles and functions of VvNAC genes.
关键词	Grapevine Vitis vinifera NAC domain Gene family
学科领域	Plant Sciences
DOI	10.1007/s00299-012-1340-y
收录类别	SCI
语种	英语
WOS关键词	MOLECULAR CHARACTERIZATION ; FUNCTIONAL-ANALYSIS ; ARABIDOPSIS ; MEMBER ; EXPRESSION ; OSNAC6 ; DEATH
WOS研究方向	Science Citation Index Expanded (SCI-EXPANDED)
WOS记录号	WOS:000313009000006
出版者	SPRINGER
文献子类	Article
出版地	NEW YORK
EISSN	1432-203X
资助机构	National Natural Science Foundation of China (NSFC)(National Natural Science Foundation of China (NSFC))
作者邮箱	fang, lin chuan/K-4923-2013
引用统计	被引频次：134[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.ibcas.ac.cn/handle/2S10CLM1/27955
专题	中科院北方资源植物重点实验室
作者单位	1.Chinese Acad Sci, Key Lab Plant Germplasm Enhancement & Special Agr, Wuhan Bot Garden, Wuhan 430074, Peoples R China 2.Chinese Acad Sci, Beijing Key Lab Grape Sci & Enol, Lab Plant Resources, Inst Bot, Beijing 100093, Peoples R China 3.Chinese Acad Sci, Grad Sch, Beijing 100049, Peoples R China
推荐引用方式 GB/T 7714	Wang, Nian,Zheng, Yu,Xin, Haiping,et al. Comprehensive analysis of NAC domain transcription factor gene family in Vitis vinifera[J]. PLANT CELL REPORTS,2013,32(1):61-75.
APA	Wang, Nian,Zheng, Yu,Xin, Haiping,Fang, Linchuan,&Li, Shaohua.(2013).Comprehensive analysis of NAC domain transcription factor gene family in Vitis vinifera.PLANT CELL REPORTS,32(1),61-75.
MLA	Wang, Nian,et al."Comprehensive analysis of NAC domain transcription factor gene family in Vitis vinifera".PLANT CELL REPORTS 32.1(2013):61-75.

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