Diversity, phylogeny, and adaptation of bryophytes: insights from genomic and transcriptomic data

doi:10.1093/jxb/erac127

	Diversity, phylogeny, and adaptation of bryophytes: insights from genomic and transcriptomic data
	Wang, Qing-Hua ; Zhang, Jian ; Liu, Yang 1,2; Jia, Yu ; Jiao, Yuan-Nian; Xu, Bo; Chen, Zhi-Duan
	2022
发表期刊	JOURNAL OF EXPERIMENTAL BOTANY
ISSN	0022-0957
卷号	73 期号:13 页码:4306-4322
摘要	We review recent advances in the knowledge of bryophyte diversity, phylogeny, and adaptation made using genomic and transcriptomic data, and particularly emphasize their adaptation to early land environments and modern ecosystems. Bryophytes including mosses, liverworts, and hornworts are among the earliest land plants, and occupy a crucial phylogenetic position to aid in the understanding of plant terrestrialization. Despite their small size and simple structure, bryophytes are the second largest group of extant land plants. They live ubiquitously in various habitats and are highly diversified, with adaptive strategies to modern ecosystems on Earth. More and more genomes and transcriptomes have been assembled to address fundamental questions in plant biology. Here, we review recent advances in bryophytes associated with diversity, phylogeny, and ecological adaptation. Phylogenomic studies have provided increasing supports for the monophyly of bryophytes, with hornworts sister to the Setaphyta clade including liverworts and mosses. Further comparative genomic analyses revealed that multiple whole-genome duplications might have contributed to the species richness and morphological diversity in mosses. We highlight that the biological changes through gene gain or neofunctionalization that primarily evolved in bryophytes have facilitated the adaptation to early land environments; among the strategies to adapt to modern ecosystems in bryophytes, desiccation tolerance is the most remarkable. More genomic information for bryophytes would shed light on key mechanisms for the ecological success of these 'dwarfs' in the plant kingdom.
关键词	Adaptation genome hornworts liverworts mosses plant terrestrialization transcriptome
学科领域	Plant Sciences
DOI	10.1093/jxb/erac127
收录类别	SCI
语种	英语
WOS关键词	EARLY LAND PLANTS ; PHYSCOMITRELLA-PATENS ; ANTARCTIC MOSS ; EVOLUTIONARY INSIGHTS ; MARCHANTIA-POLYMORPHA ; POHLIA-NUTANS ; B RADIATION ; KNOX GENES ; DIVERSIFICATION ; REVEALS
WOS研究方向	Science Citation Index Expanded (SCI-EXPANDED)
WOS记录号	WOS:000811211600001
出版者	OXFORD UNIV PRESS
Special Issue	SI
文献子类	Review
出版地	OXFORD
EISSN	1460-2431
资助机构	National Natural Science Foundation of China [NNSF 32070233, 31970214] ; Open Research Foundation of State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences [LSEB2021-2]
作者邮箱	zhiduan@ibcas.ac.cn
作品OA属性	Green Submitted
引用统计	被引频次：15[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.ibcas.ac.cn/handle/2S10CLM1/28616
专题	系统与进化植物学国家重点实验室
作者单位	1.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China 2.Fairy Lake Bot Garden, Lab Southern Subtrop Plant Divers, Shenzhen 518004, Peoples R China 3.Chinese Acad Sci, Shenzhen 518004, Peoples R China
推荐引用方式 GB/T 7714	Wang, Qing-Hua,Zhang, Jian,Liu, Yang,et al. Diversity, phylogeny, and adaptation of bryophytes: insights from genomic and transcriptomic data[J]. JOURNAL OF EXPERIMENTAL BOTANY,2022,73(13):4306-4322.
APA	Wang, Qing-Hua.,Zhang, Jian.,Liu, Yang.,Jia, Yu.,Jiao, Yuan-Nian.,...&Chen, Zhi-Duan.(2022).Diversity, phylogeny, and adaptation of bryophytes: insights from genomic and transcriptomic data.JOURNAL OF EXPERIMENTAL BOTANY,73(13),4306-4322.
MLA	Wang, Qing-Hua,et al."Diversity, phylogeny, and adaptation of bryophytes: insights from genomic and transcriptomic data".JOURNAL OF EXPERIMENTAL BOTANY 73.13(2022):4306-4322.

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