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| A genome for Cissus illustrates features underlying its evolutionary success in dry savannas | |
Xin, Haiping1,2; Wang, Yi3; Li, Qingyun1,2,4; Wan, Tao2,5; Hou, Yujun4; Liu, Yuanshuang4; Gichuki, Duncan Kiragu4; Zhou, Huimin4; Zhu, Zhenfei4; Xu, Chen; Zhou, Yadong1,2; Liu, Zhiming5; Li, Rongjun1,2; Liu, Bing2,6; Lu, Limin2,6; Jiang, Hongsheng; Zhang, Jisen7; Wan, Junnan1,2; Aryal, Rishi8; Hu, Guangwan2; Chen, Zhiduan2,6 ; Gituru, Robert Wahiti9; Liang, Zhenchang2,3; Wen, Jun10; Wang, Qingfeng1,2
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| 2022 | |
| 发表期刊 | HORTICULTURE RESEARCH
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| ISSN | 2662-6810 |
| 卷号 | 9 |
| 摘要 | Cissus is the largest genus in Vitaceae and is mainly distributed in the tropics and subtropics. Crassulacean acid metabolism (CAM), a photosynthetic adaptation to the occurrence of succulent leaves or stems, indicates that convergent evolution occurred in response to drought stress during species radiation. Here we provide the chromosomal level assembly of Cissus rotundifolia (an endemic species in Eastern Africa) and a genome-wide comparison with grape to understand genome divergence within an ancient eudicot family. Extensive transcriptome data were produced to illustrate the genetics underpinning C. rotundifolia's ecological adaption to seasonal aridity. The modern karyotype and smaller genome of C. rotundifolia (n=12, 350.69 Mb/1C), which lack further whole-genome duplication, were mainly derived from gross chromosomal rearrangements such as fusions and segmental duplications, and were sculpted by a very recent burst of retrotransposon activity. Bias in local gene amplification contributed to its remarkable functional divergence from grape, and the specific proliferated genes associated with abiotic and biotic responses (e.g. HSP-20, NBS-LRR) enabled C. rotundifolia to survive in a hostile environment. Reorganization of existing enzymes of CAM characterized as diurnal expression patterns of relevant genes further confer the ability to thrive in dry savannas. |
| 学科领域 | Plant Sciences ; Genetics & Heredity ; Horticulture |
| DOI | 10.1093/hr/uhac208 |
| 收录类别 | SCI |
| 语种 | 英语 |
| WOS关键词 | CRASSULACEAN ACID METABOLISM ; BARLEY HORDEUM-VULGARE ; TRANSCRIPTION FACTORS ; GENE ; ARABIDOPSIS ; SEQUENCE ; PROTEIN ; ANNOTATION ; FAMILY ; SIZE |
| WOS研究方向 | Science Citation Index Expanded (SCI-EXPANDED) |
| WOS记录号 | WOS:000922866000057 |
| 出版者 | OXFORD UNIV PRESS INC |
| 文献子类 | Article |
| 出版地 | CARY |
| EISSN | 2052-7276 |
| 资助机构 | National Science Foundation of China [31961143026] ; Scientific Research Program of Sino Africa Joint Research Center [SAJC201614, SAJL201607] |
| 作者邮箱 | zl249@ibcas.ac.cn ; wenj@si.edu ; qfwang@wbgcas.cn |
| 作品OA属性 | gold, Green Published |
| 引用统计 | |
| 文献类型 | 期刊论文 |
| 条目标识符 | http://ir.ibcas.ac.cn/handle/2S10CLM1/28724 |
| 专题 | 系统与进化植物学国家重点实验室 |
| 作者单位 | 1.Chinese Acad Sci, Core Bot Gardens Wuhan Bot Garden, Wuhan 430074, Peoples R China 2.Chinese Acad Sci, CAS Key Lab Plant Germplasm Enhancement & Special, Wuhan Bot Garden, Wuhan 430074, Peoples R China 3.Chinese Acad Sci, Sino Africa Joint Res Ctr, Wuhan 430074, Peoples R China 4.Chinese Acad Sci, Inst Bot, CAS Key Lab Plant Resources, Beijing 100093, Peoples R China 5.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 6.Shenzhen & Chinese Acad Sci, Key Lab Southern Subtrop Plant Divers, Fairy Lake Bot Garden, Shenzhen 518004, Peoples R China 7.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China 8.Fujian Agr & Forestry Univ, Ctr Genom & Biotechnol, Haixia Inst Sci & Technol, Fuzhou 350002, Peoples R China 9.North Carolina State Univ, Dept Hort Sci, Raleigh, NC 27695 USA 10.Jomo Kenyatta Univ Agr & Technol, Dept Bot, Nairobi 6200000200, Kenya 11.Smithsonian Inst, Dept Bot, Natl Museum Nat Hist, Washington, DC 20013 USA |
| 推荐引用方式 GB/T 7714 | Xin, Haiping,Wang, Yi,Li, Qingyun,et al. A genome for Cissus illustrates features underlying its evolutionary success in dry savannas[J]. HORTICULTURE RESEARCH,2022,9. |
| APA | Xin, Haiping.,Wang, Yi.,Li, Qingyun.,Wan, Tao.,Hou, Yujun.,...&Wang, Qingfeng.(2022).A genome for Cissus illustrates features underlying its evolutionary success in dry savannas.HORTICULTURE RESEARCH,9. |
| MLA | Xin, Haiping,et al."A genome for Cissus illustrates features underlying its evolutionary success in dry savannas".HORTICULTURE RESEARCH 9(2022). |
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| Xin-2022-A genome fo（2841KB） | 期刊论文 | 出版稿 | 开放获取 | CC BY-NC-SA | 浏览 请求全文 | |
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