Phylogenomic Analysis Reconstructed the Order Matoniales from Paleopolyploidy Veil

doi:10.3390/plants11121529

	Phylogenomic Analysis Reconstructed the Order Matoniales from Paleopolyploidy Veil
	Shu, Jiang-Ping ; Wang, Hao 4; Shen, Hui 4; Wang, Rui-Jiang ; Fu, Qiang ; Wang, Yong-Dong ; Jiao, Yuan-Nian; Yan, Yue-Hong
	2022
发表期刊	PLANTS-BASEL
卷号	11 期号:12
摘要	Phylogenetic conflicts limit our understanding of the evolution of terrestrial life under multiple whole genome duplication events, and the phylogeny of early terrestrial plants remains full of controversy. Although much incongruence has been solved with so-called robust topology based on single or lower copy genes, the evolutionary mechanisms behind phylogenetic conflicts such as polyploidization remain poorly understood. Here, through decreasing the effects of polyploidization and increasing the samples of species, which represent all four orders and eight families that comprise early leptosporangiate ferns, we have reconstructed a robust phylogenetic tree and network with 1125 1-to-1 orthologs based on both coalescent and concatenation methods. Our data consistently suggest that Matoniales, as a monophyletic lineage including Matoniaceae and Dipteridaceae, should be redefined as an ordinal rank. Furthermore, we have identified and located at least 11 whole-genome duplication events within the evolutionary history of four leptosporangiates lineages, and associated polyploidization with higher speciation rates and mass extinction events. We hypothesize that paleopolyploidization may have enabled leptosporangiate ferns to survive during mass extinction events at the end Permian period and then flourish throughout the Mesozoic era, which is supported by extensive fossil records. Our results highlight how ancient polyploidy can result in rapid species radiation, thus causing phylogenetic conflicts yet allowing plants to survive and thrive during mass extinction events.
关键词	ancient polyploidization ancient radiation reticulate evolution mass extinction ferns phylogeny 1-to-1 orthologous genes
学科领域	Plant Sciences
DOI	10.3390/plants11121529
收录类别	SCI
语种	英语
WOS关键词	WHOLE GENOME DUPLICATIONS ; IN-SITU SPORES ; FERNS ; EVOLUTION ; DIVERSIFICATION ; POLYPLOIDY ; TREE ; CLASSIFICATION ; CONSEQUENCES ; DIVERSITY
WOS研究方向	Science Citation Index Expanded (SCI-EXPANDED)
WOS记录号	WOS:000815942100001
出版者	MDPI
文献子类	Article
出版地	BASEL
EISSN	2223-7747
资助机构	Strategic Priority Research Program of the Chinese Academy of Sciences [XDA19050404] ; National Natural Science Foundation of China [31800174, 32170216] ; Shanghai Landscaping and City Appearance Administrative Bureau of China [G182410]
作者邮箱	jpshu@scbg.ac.cn ; wanghao6081336@163.com ; shenhui@cemps.ac.cn ; wangrj@scbg.ac.cn ; jinhua@nigpas.ac.cn ; ydwang@nigpas.ac.cn ; jiaoyn@ibcas.ac.cn ; yhyan@sibs.ac.cn
作品OA属性	gold, Green Published
引用统计	被引频次：2[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.ibcas.ac.cn/handle/2S10CLM1/28778
专题	中科院北方资源植物重点实验室
作者单位	1.Natl Orchid Conservat Ctr China, Shenzhen Key Lab Orchid Conservat & Utilizat, Shenzhen 518114, Peoples R China 2.Natl Orchid Conservat Ctr China, Key Lab Natl Forestry & Grassland Adm Orchid Cons, Shenzhen 518114, Peoples R China 3.Orchid Conservat & Res Ctr Shenzhen, Shenzhen 518114, Peoples R China 4.Chinese Acad Sci, South China Bot Garden, Key Lab Plant Resources Conservat & Sustainable U, Guangzhou 510650, Peoples R China 5.Chinese Acad Sci, Shanghai Chenshan Bot Garden, Shanghai Chenshan Plant Sci Res Ctr, Shanghai 201602, Peoples R China 6.Chinese Acad Sci, Nanjing Inst Geol & Palaeontol, State Key Lab Palaeobiol & Stratig, Nanjing 210008, Peoples R China 7.Chinese Acad Sci, Ctr Excellence Life & Paleoenvironm, Nanjing 210008, Peoples R China 8.Chinese Acad Sci, Inst Bot, Beijing 100039, Peoples R China
推荐引用方式 GB/T 7714	Shu, Jiang-Ping,Wang, Hao,Shen, Hui,et al. Phylogenomic Analysis Reconstructed the Order Matoniales from Paleopolyploidy Veil[J]. PLANTS-BASEL,2022,11(12).
APA	Shu, Jiang-Ping.,Wang, Hao.,Shen, Hui.,Wang, Rui-Jiang.,Fu, Qiang.,...&Yan, Yue-Hong.(2022).Phylogenomic Analysis Reconstructed the Order Matoniales from Paleopolyploidy Veil.PLANTS-BASEL,11(12).
MLA	Shu, Jiang-Ping,et al."Phylogenomic Analysis Reconstructed the Order Matoniales from Paleopolyploidy Veil".PLANTS-BASEL 11.12(2022).

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