Knowledge Management System Of Institute Of Botany,CAS
| The Cycas genome and the early evolution of seed plants | |
Liu, Yang1; Wang, Sibo; Li, Linzhou; Yang, Ting; Dong, Shanshan1; Wei, Tong; Wu, Shengdan2; Liu, Yongbo3; Gong, Yiqing1; Feng, Xiuyan4; Ma, Jianchao5; Chang, Guanxiao5; Huang, Jinling4,5,6; Yang, Yong7,11; Wang, Hongli8; Liu, Min; Xu, Yan8; Liang, Hongping8; Yu, Jin8; Cai, Yuqing8; Zhang, Zhaowu8; Fan, Yannan; Mu, Weixue; Sahu, Sunil Kumar; Liu, Shuchun1; Lang, Xiaoan1,9; Yang, Leilei1; Li, Na1; Habib, Sadaf1,10; Yang, Yongqiong11; Lindstrom, Anders J.; Liang, Pei13; Goffinet, Bernard; Zaman, Sumaira; Wegrzyn, Jill L.; Li, Dexiang9; Liu, Jian4,24; Cui, Jie15; Sonnenschein, Eva C.; Wang, Xiaobo17; Ruan, Jue17; Xue, Jia-Yu; Shao, Zhu-Qing; Song, Chi20; Fan, Guangyi; Li, Zhen21; Zhang, Liangsheng22,23; Liu, Jianquan24; Liu, Zhong-Jian; Jiao, Yuannian ; Wang, Xiao-Quan; Wu, Hong27; Wang, Ertao28; Lisby, Michael29; Yang, Huanming; Wang, Jian; Liu, Xin; Xu, Xun; Li, Nan1; Soltis, Pamela S.; Van de Peer, Yves18,21,31; Soltis, Douglas E.; Gong, Xun4; Liu, Huan; Zhang, Shouzhou1
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| 2022 | |
| 发表期刊 | NATURE PLANTS
 |
| ISSN | 2055-026X |
| 卷号 | 8期号:4页码:389+ |
| 摘要 | Cycads represent one of the most ancient lineages of living seed plants. Identifying genomic features uniquely shared by cycads and other extant seed plants, but not non-seed-producing plants, may shed light on the origin of key innovations, as well as the early diversification of seed plants. Here, we report the 10.5-Gb reference genome of Cycas panzhihuaensis, complemented by the transcriptomes of 339 cycad species. Nuclear and plastid phylogenomic analyses strongly suggest that cycads and Ginkgo form a clade sister to all other living gymnosperms, in contrast to mitochondrial data, which place cycads alone in this position. We found evidence for an ancient whole-genome duplication in the common ancestor of extant gymnosperms. The Cycas genome contains four homologues of the fitD gene family that were likely acquired via horizontal gene transfer from fungi, and these genes confer herbivore resistance in cycads. The male-specific region of the Y chromosome of C. panzhihuaensis contains a MADS-box transcription factor expressed exclusively in male cones that is similar to a system reported in Ginkgo, suggesting that a sex determination mechanism controlled by MADS-box genes may have originated in the common ancestor of cycads and Ginkgo. The C. panzhihuaensis genome provides an important new resource of broad utility for biologists. The study assembled a chromosome-level genome of Cycas panzhihuaensis, the last major lineage of seed plants for which a high-quality genome assembly was lacking. The study closes an important gap in our understanding of genome structure and evolution in seed plants. |
| 学科领域 | Plant Sciences |
| DOI | 10.1038/s41477-022-01129-7 |
| 收录类别 | SCI |
| 语种 | 英语 |
| WOS关键词 | PHYLOGENETIC ANALYSIS ; SEX-CHROMOSOMES ; SEQUENCE ; GENE ; RECONSTRUCTION ; PROGRAM ; TOOL ; IDENTIFICATION ; POLYPLOIDY ; METABOLISM |
| WOS研究方向 | Science Citation Index Expanded (SCI-EXPANDED) |
| WOS记录号 | WOS:000784028800003 |
| 出版者 | NATURE PORTFOLIO |
| 文献子类 | Article |
| 出版地 | BERLIN |
| EISSN | 2055-0278 |
| 资助机构 | Scientific Foundation of Urban Management Bureau of Shenzhen [201916, 202019, 202105] ; National Key R&D Program of China [2019YFC1711000] ; Biodiversity Survey and Assessment Project of the Ministry of Ecology and Environment, China [2019HJ2096001006] ; Major Science and Technology Projects of Yunnan Province (Digitalization, development and application of biotic resource) [860 202002AA100007] ; Shenzhen Municipal Government of China [JCYJ20151015162041454] ; European Research Council (ERC) under the European Union's Horizon 2020 research and innovation program [833522] ; Ghent University (Methusalem) [BOF.MET.2021.0005.01] ; National Cycad Conservation Center at Fairy Lake Botanical Garden ; China National GeneBank (CNGB) |
| 作者邮箱 | yang.liu0508@gmail.com ; yvpee@psb.vib-ugent.be ; dsoltis@ufl.edu ; gongxun@mail.kib.ac.cn ; liuhuan@genomics.cn ; shouzhouz@szbg.ac.cn |
| 作品OA属性 | hybrid, Green Published |
| 引用统计 | |
| 文献类型 | 期刊论文 |
| 条目标识符 | http://ir.ibcas.ac.cn/handle/2S10CLM1/28827 |
| 专题 | 系统与进化植物学国家重点实验室 |
| 作者单位 | 1.BGI Shenzhen, State Key Lab Agr Genom, Shenzhen, Peoples R China 2.Shenzhen & Chinese Acad Sci, Key Lab Southern Subtrop Plant Divers, Fairy Lake Bot Garden, Shenzhen, Peoples R China 3.Lanzhou Univ, Coll Ecol, State Key Lab Grassland Agroecosyst, Lanzhou, Peoples R China 4.Chinese Res Inst Environm Sci, State Environm Protect Key Lab Reg Ecoproc & Func, Beijing, Peoples R China 5.Chinese Acad Sci, Kunming Inst Bot, Key Lab Plant Divers & Biogeog East Asia, Kunming, Yunnan, Peoples R China 6.Henan Univ, Key Lab Plant Stress Biol, State Key Lab Crop Stress Adaptat & Improvement, Kaifeng, Peoples R China 7.East Carolina Univ, Dept Biol, Greenville, NC USA 8.Nanjing Forestry Univ, Coll Biol & Environm, Nanjing, Peoples R China 9.Univ Chinese Acad Sci, Coll Life Sci, Beijing, Peoples R China 10.Nanning Bot Garden, Nanning, Peoples R China 11.Sun Yat Sen Univ, Sch Life Sci, Guangzhou, Peoples R China 12.Sichuan Cycas Panzhihuaensis Natl Nat Reserve, Panzhihua, Peoples R China 13.Lindstrom, Anders J.] Global Biodivers Conservancy, Chon Buri, Thailand 14.China Agr Univ, Dept Entomol, Beijing, Peoples R China 15.Goffinet, Bernard; Zaman, Sumaira; Wegrzyn, Jill L.] Univ Connecticut, Dept Ecol & Evolutionary Biol, Storrs, CT USA 16.Shenzhen Univ, Coll Life Sci & Oceanog, Longhua Inst Innovat Biotechnol, Guangdong Prov Key Lab Plant Epigenet, Shenzhen, Peoples R China 17.Sonnenschein, Eva C.] Tech Univ Denmark, Dept Biotechnol & Biomed, Lyngby, Denmark 18.Chinese Acad Agr Sci, Shenzhen Agr Genome Res Inst, Shenzhen, Peoples R China 19.Nanjing Agr Univ, Acad Adv Interdisciplinary Studies, Coll Hort, Nanjing, Peoples R China 20.Nanjing Univ, Sch Life Sci, State Key Lab Pharmaceut Biotechnol, Nanjing, Peoples R China 21.Chengdu Univ Tradit Chinese Med, Chengdu, Peoples R China 22.Univ Ghent, VIB UGent Ctr Plant Syst Biol, Dept Plant Biotechnol & Bioinformat, Ghent, Belgium 23.Zhejiang Univ, Coll Agr & Biotechnol, Hangzhou, Peoples R China 24.Zhejiang Univ, Hainan Inst, Sanya, Peoples R China 25.Sichuan Univ, Coll Life Sci, Chengdu, Peoples R China 26.Fujian Agr & Forestry Univ, Coll Landscape Architecture, Key Lab Orchid Conservat & Utilizat, Natl Forestry & Grassland Adm, Fuzhou, Peoples R China 27.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing, Peoples R China 28.South China Agr Univ, Coll Life Sci, Guangzhou, Peoples R China 29.Chinese Acad Sci, Natl Key Lab Plant Mol Genet, Ctr Excellence Mol Plant Sci, Inst Plant Physiol & Ecol, Shanghai, Peoples R China 30.Univ Copenhagen, Dept Biol, Copenhagen, Denmark 31.Soltis, Pamela S.; Soltis, Douglas E.] Univ Florida, Florida Museum Nat Hist, Gainesville, FL 32611 USA 32.Univ Pretoria, Dept Biochem Genet & Microbiol, Pretoria, South Africa 33.Soltis, Douglas E.] Univ Florida, Dept Biol, Gainesville, FL 32611 USA |
| 推荐引用方式 GB/T 7714 | Liu, Yang,Wang, Sibo,Li, Linzhou,et al. The Cycas genome and the early evolution of seed plants[J]. NATURE PLANTS,2022,8(4):389+. |
| APA | Liu, Yang.,Wang, Sibo.,Li, Linzhou.,Yang, Ting.,Dong, Shanshan.,...&Zhang, Shouzhou.(2022).The Cycas genome and the early evolution of seed plants.NATURE PLANTS,8(4),389+. |
| MLA | Liu, Yang,et al."The Cycas genome and the early evolution of seed plants".NATURE PLANTS 8.4(2022):389+. |
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