The flying spider-monkey tree fern genome provides insights into fern evolution and arborescence

doi:10.1038/s41477-022-01146-6

	The flying spider-monkey tree fern genome provides insights into fern evolution and arborescence
	Huang, Xiong ; Wang, Wenling 1; Gong, Ting 2,3,4; Wickell, David ; Kuo, Li-Yaung ; Zhang, Xingtan 1; Wen, Jialong 8; Kim, Hoon 9,10; Lu, Fachuang 9,10; Zhao, Hansheng 11; Chen, Song 12; Li, Hui ; Wu, Wenqi 13; Yu, Changjiang 14; Chen, Su 12; Fan, Wei ; Chen, Shuai 1; Bao, Xiuqi 2,3,4; Li, Li 2,3,4; Zhang, Dan 2,3,4; Jiang, Longyu 2,3,4; Yan, Xiaojing ; Liao, Zhenyang 1; Zhou, Gongke 14; Guo, Yalong15 ; Ralph, John 9,10; Sederoff, Ronald R.; Wei, Hairong 17; Zhu, Ping 2,3,4; Li, Fay-Wei ; Ming, Ray 18; Li, Quanzi
	2022
发表期刊	NATURE PLANTS
ISSN	2055-026X
卷号	8 期号:5 页码:500+
摘要	To date, little is known about the evolution of fern genomes, with only two small genomes published from the heterosporous Salviniales. Here we assembled the genome of Alsophila spinulosa, known as the flying spider-monkey tree fern, onto 69 pseudochromosomes. The remarkable preservation of synteny, despite resulting from an ancient whole-genome duplication over 100 million years ago, is unprecedented in plants and probably speaks to the uniqueness of tree ferns. Our detailed investigations into stem anatomy and lignin biosynthesis shed new light on the evolution of stem formation in tree ferns. We identified a phenolic compound, alsophilin, that is abundant in xylem, and we provided the molecular basis for its biosynthesis. Finally, analysis of demographic history revealed two genetic bottlenecks, resulting in rapid demographic declines of A. spinulosa. The A. spinulosa genome fills a crucial gap in the plant genomic landscape and helps elucidate many unique aspects of tree fern biology. The genome of the flying spider-monkey tree fern and investigations on stem formation and secondary metabolite biosynthesis promote our understanding of fern evolution and arborescence, facilitating the protection and utilization of this endangered species.
学科领域	Plant Sciences
DOI	10.1038/s41477-022-01146-6
收录类别	SCI
语种	英语
WOS关键词	SYRINGYL LIGNIN BIOSYNTHESIS ; PHYLOGENETIC ANALYSIS ; TRANSCRIPTION FACTORS ; MOLECULAR EVOLUTION ; READ ALIGNMENT ; ORIGIN ; SELAGINELLA ; TOOL ; ASSOCIATION ; PLANTS
WOS研究方向	Science Citation Index Expanded (SCI-EXPANDED)
WOS记录号	WOS:000792577300003
出版者	NATURE PORTFOLIO
文献子类	Article
出版地	BERLIN
EISSN	2055-0278
资助机构	Fundamental Research Funds of Chinese Academy of Forestry [CAFYBB2017ZY001] ; National Natural Science Foundation of China [32071787] ; Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University ; CAMS Innovation Fund for Medical Sciences [CIFMS2021-I2M-1-029] ; PUMC Disciplinary Development of Synthetic Biology [201920100801] ; DOE Great Lakes Bioenergy Research Center (DOE BER Office of Science) [DE-SC0018409]
作者邮箱	hairong@mtu.edu ; zhuping@imm.ac.cn ; fl329@cornell.edu ; rayming@illinois.edu ; liqz@caf.ac.cn
作品OA属性	Green Submitted, Green Published, hybrid
引用统计	被引频次：38[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.ibcas.ac.cn/handle/2S10CLM1/28857
专题	系统与进化植物学国家重点实验室
作者单位	1.Chinese Acad Forestry, State Key Lab Tree Genet & Breeding, Beijing, Peoples R China 2.Chinese Acad Agr Sci, Agr Genom Inst Shenzhen, Shenzhen Branch,Minist Agr & Rural Affairs, Guangdong Lab Lingnan Modern Agr,Genome Anal Lab, Shenzhen, Peoples R China 3.Chinese Acad Med Sci & Peking Union Med Coll, State Key Lab Bioact Subst & Funct Nat Med, Beijing, Peoples R China 4.Chinese Acad Med Sci & Peking Union Med Coll, NHC Key Lab Biosynth Nat Prod, Beijing, Peoples R China 5.Chinese Acad Med Sci & Peking Union Med Coll, CAMS Key Lab Enzyme & Biocatalysis Nat Drugs, Inst Mat Med, Beijing, Peoples R China 6.Thompson Inst, Ithaca, NY 14853 USA 7.Cornell Univ, Plant Biol Sect, Ithaca, NY 14853 USA 8.Natl Tsing Hua Univ, Inst Mol & Cellular Biol, Hsinchu, Taiwan 9.Beijing Forestry Univ, Beijing Key Lab Lignocellulos Chem, Beijing, Peoples R China 10.Univ Wisconsin, Dept Biochem, Wisconsin Energy Inst, 420 Henry Mall, Madison, WI 53705 USA 11.Univ Wisconsin, DOE Great Lakes Bioenergy Res Ctr, Wisconsin Energy Inst, Madison, WI USA 12.State Forestry Adm, Inst Gene Bamboo & Rattan Resources, Int Ctr Bamboo & Rattan, Key Open Lab Sci & Technol Bamboo & Rattan, Beijing, Peoples R China 13.Northeast Forestry Univ, State Key Lab Tree Genet & Breeding, Harbin, Peoples R China 14.Beijing Forestry Univ, Beijing Adv Innovat Ctr Tree Breeding Mol Design, Beijing, Peoples R China 15.Qingdao Agr Univ, Coll Landscape Architecture & Forestry, Qingdao, Peoples R China 16.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing, Peoples R China 17.Sederoff, Ronald R.] North Carolina State Univ, Dept Forestry & Environm Resources, Forest Biotechnol Grp, Raleigh, NC USA 18.Michigan Technol Univ, Coll Forest Resources & Environm Sci, Houghton, MI 49931 USA 19.Univ Illinois, Dept Plant Biol, Urbana, IL 61801 USA
推荐引用方式 GB/T 7714	Huang, Xiong,Wang, Wenling,Gong, Ting,et al. The flying spider-monkey tree fern genome provides insights into fern evolution and arborescence[J]. NATURE PLANTS,2022,8(5):500+.
APA	Huang, Xiong.,Wang, Wenling.,Gong, Ting.,Wickell, David.,Kuo, Li-Yaung.,...&Li, Quanzi.(2022).The flying spider-monkey tree fern genome provides insights into fern evolution and arborescence.NATURE PLANTS,8(5),500+.
MLA	Huang, Xiong,et al."The flying spider-monkey tree fern genome provides insights into fern evolution and arborescence".NATURE PLANTS 8.5(2022):500+.

条目包含的文件
文件名称/大小	文献类型	版本类型	开放类型	使用许可
Huang-2022-The flyin（12162KB）	期刊论文	出版稿	开放获取	CC BY-NC-SA	浏览请求全文