Plastid Phylogenomics and Plastomic Diversity of the Extant Lycophytes

doi:10.3390/genes13071280

	Plastid Phylogenomics and Plastomic Diversity of the Extant Lycophytes
	Chen, Sisi 1,2,3; Wang, Ting 1,4; Shu, Jiangping 1,3,5; Xiang, Qiaoping 2; Yang, Tuo 1; Zhang, Xianchun2 ; Yan, Yuehong 1
	2022
发表期刊	GENES
卷号	13 期号:7
摘要	Although extant lycophytes represent the most ancient surviving lineage of early vascular plants, their plastomic diversity has long been neglected. The ancient evolutionary history and distinct genetic diversity patterns of the three lycophyte families, each with its own characteristics, provide an ideal opportunity to investigate the interfamilial relationships of lycophytes and their associated patterns of evolution. To compensate for the lack of data on Lycopodiaceae, we sequenced and assembled 14 new plastid genomes (plastomes). Combined with other lycophyte plastomes available online, we reconstructed the phylogenetic relationships of the extant lycophytes based on 93 plastomes. We analyzed, traced, and compared the plastomic diversity and divergence of the three lycophyte families (Isoetaceae, Lycopodiaceae, and Selaginellaceae) in terms of plastomic diversity by comparing their plastome sizes, GC contents, substitution rates, structural rearrangements, divergence times, ancestral states, RNA editings, and gene losses. Comparative analysis of plastid phylogenomics and plastomic diversity of three lycophyte families will set a foundation for further studies in biology and evolution in lycophytes and therefore in vascular plants.
关键词	lycophytes plastid genome comparative genomics clubmoss plastomic diversity
学科领域	Genetics & Heredity
DOI	10.3390/genes13071280
收录类别	SCI
语种	英语
WOS关键词	COMPLETE CHLOROPLAST GENOME ; EARLY EVOLUTION ; SEQUENCE ; EXTREME ; ORIGIN ; PHYLOGENETICS ; HUPERZIA ; CUPRESSOPHYTES ; TRANSCRIPTOME ; RECOMBINATION
WOS研究方向	Science Citation Index Expanded (SCI-EXPANDED)
WOS记录号	WOS:000833246700001
出版者	MDPI
文献子类	Article
出版地	BASEL
EISSN	2073-4425
资助机构	China National Orchid Conservation Center ; Orchid Conservation and Research Center of Shenzhen (CNOCC) ; State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, the Chinese Academy of Sciences (LSEB, IBCAS) ; University of Chinese Academy of Sciences (UCAS) ; Strategic Priority Research Program of the Chinese Academy of Sciences [XDA19050404] ; National Natural Science Foundation of China [31872651] ; Basic and Applied Basic Research Foundation of Guangdong Province [2021A1515010920]
作者邮箱	17770972237@163.com ; tingwang93@126.com ; jpshu@scbg.ac.cn ; qpxiang@ibcas.ac.cn ; yangtuo416@outlook.com ; zhangxc@ibcas.ac.cn ; yhyan@sibs.ac.cn
作品OA属性	gold, Green Published
引用统计	被引频次：3[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.ibcas.ac.cn/handle/2S10CLM1/28913
专题	系统与进化植物学国家重点实验室
作者单位	1.Natl Orchid Conservat Ctr China, Shenzhen Key Lab Orchid Conservat & Utilizat, Shenzhen 518114, Peoples R China 2.Orchid Conservat & Res Ctr Shenzhen, Shenzhen 518114, Peoples R China 3.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China 4.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 5.Southwest Forestry Univ, Coll Biodivers Conservat, Kunming 650224, Yunnan, Peoples R China 6.Chinese Acad Sci, Key Lab Plant Resources Conservat & Sustainable U, South China Bot Garden, Guangzhou 510650, Peoples R China
推荐引用方式 GB/T 7714	Chen, Sisi,Wang, Ting,Shu, Jiangping,et al. Plastid Phylogenomics and Plastomic Diversity of the Extant Lycophytes[J]. GENES,2022,13(7).
APA	Chen, Sisi.,Wang, Ting.,Shu, Jiangping.,Xiang, Qiaoping.,Yang, Tuo.,...&Yan, Yuehong.(2022).Plastid Phylogenomics and Plastomic Diversity of the Extant Lycophytes.GENES,13(7).
MLA	Chen, Sisi,et al."Plastid Phylogenomics and Plastomic Diversity of the Extant Lycophytes".GENES 13.7(2022).

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