Potential allopolyploid origin of Ericales revealed with gene-tree reconciliation

doi:10.3389/fpls.2022.1006904

	Potential allopolyploid origin of Ericales revealed with gene-tree reconciliation
	Nie, Shuai ; Tian, Xue-Chan ; Kong, Lei ; Zhao, Shi-Wei ; Chen, Zhao-Yang ; Jiao, Si-Qian ; El-Kassaby, Yousry A.; Porth, Ilga 3; Yang, Fu-Sheng ; Zhao, Wei 7; Mao, Jian-Feng
	2022
发表期刊	FRONTIERS IN PLANT SCIENCE
ISSN	1664-462X
卷号	13
摘要	Few incidents of ancient allopolyploidization (polyploidization by hybridization or merging diverged genomes) were previously revealed, although there is significant evidence for the accumulation of whole genome duplications (WGD) in plants. Here, we focused on Ericales, one of the largest and most diverse angiosperm orders with significant ornamental and economic value. Through integrating 24 high-quality whole genome data selected from similar to 200 Superasterids genomes/species and an algorithm of topology-based genetree reconciliation, we explored the evolutionary history of in Ericales with ancient complex. We unraveled the allopolyploid origin of Ericales and detected extensive lineage-specific gene loss following the polyploidization. Our study provided a new hypothesis regarding the origin of Ericales and revealed an instructive perspective of gene loss as a pervasive source of genetic variation and adaptive phenotypic diversity in Ericales.
关键词	Ericales allopolyploidization whole genome duplication gene loss hybridization
学科领域	Plant Sciences
DOI	10.3389/fpls.2022.1006904
收录类别	SCI
语种	英语
WOS关键词	MOLECULAR PHYLOGENETICS ; GENOME DUPLICATIONS ; EVOLUTION ; DIVERSIFICATION ; POLYPLOIDY ; ANGIOSPERMS ; PATTERNS ; PLANTS
WOS研究方向	Science Citation Index Expanded (SCI-EXPANDED)
WOS记录号	WOS:000979652800001
出版者	FRONTIERS MEDIA SA
文献子类	Article
出版地	LAUSANNE
资助机构	National Natural Science Foundation of China [32171816] ; China Scholarship Council
作者邮箱	yang_fsh@ibcas.ac.cn ; zhao.wei@umu.se ; jianfeng.mao@bjfu.edu.cn
作品OA属性	Green Published, gold
引用统计	被引频次：1[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.ibcas.ac.cn/handle/2S10CLM1/29044
专题	系统与进化植物学国家重点实验室
作者单位	1.Beijing Forestry Univ, Coll Biol Sci & Technol,Minist Educ, Beijing Adv Innovat Ctr Tree Breeding Mol Design, Natl Engn Lab Tree Breeding,Key Lab Genet & Breed, Beijing, Peoples R China 2.Pingdingshan Univ, Henan Key Lab Germplasm Innovat & Utilizat Eco Ec, Pingdingshan, Peoples R China 3.El-Kassaby, Yousry A.] Univ British Columbia, Dept Forest & Conservat Sci, Fac Forestry, Vancouver, BC, Canada 4.Univ Laval, Fac Foresterie, Dept Sci Bois & Foret Geog & Geomat, Quebec City, PQ, Canada 5.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing, Peoples R China 6.China Natl Bot Garden, Beijing, Peoples R China 7.Univ Chinese Acad Sci, Beijing, Peoples R China 8.Umea Univ, Dept Ecol & Environm Sci, Umea Plant Sci Ctr, Umea, Sweden
推荐引用方式 GB/T 7714	Nie, Shuai,Tian, Xue-Chan,Kong, Lei,et al. Potential allopolyploid origin of Ericales revealed with gene-tree reconciliation[J]. FRONTIERS IN PLANT SCIENCE,2022,13.
APA	Nie, Shuai.,Tian, Xue-Chan.,Kong, Lei.,Zhao, Shi-Wei.,Chen, Zhao-Yang.,...&Mao, Jian-Feng.(2022).Potential allopolyploid origin of Ericales revealed with gene-tree reconciliation.FRONTIERS IN PLANT SCIENCE,13.
MLA	Nie, Shuai,et al."Potential allopolyploid origin of Ericales revealed with gene-tree reconciliation".FRONTIERS IN PLANT SCIENCE 13(2022).

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