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Integrated phylogenomic analyses unveil reticulate evolution in Parthenocissus (Vitaceae), highlighting speciation dynamics in the Himalayan-Hengduan Mountains 期刊论文
NEW PHYTOLOGIST, 2023, 卷号: 238, 期号: 2, 页码: 888-903
作者:  Yu, Jinren;  Niu, Yanting;  You, Yichen;  Cox, Cymon J.;  Barrett, Russell L.;  Trias-Blasi, Anna;  Guo, Jing;  Wen, Jun;  Lu, Limin;  Chen, Zhiduan
Adobe PDF(4450Kb)  |  收藏  |  浏览/下载：25/0  |  提交时间：2024/03/07
biogeography  comprehensive approach  Himalayan-Hengduan Mountains region  Parthenocissus  phylogenetic discordance  reticulation  speciation reversal  
Capturing single-copy nuclear genes, organellar genomes, and nuclear ribosomal DNA from deep genome skimming data for plant phylogenetics: A case study in Vitaceae 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2021, 卷号: 59, 期号: 5, 页码: 1124-1138
作者:  Liu, Bin-Bin;  Ma, Zhi-Yao;  Ren, Chen;  Hodel, Richard G. J.;  Sun, Miao;  Liu, Xiu-Qun;  Liu, Guang-Ning;  Hong, De-Yuan;  Zimmer, Elizabeth A.;  Wen, Jun
Adobe PDF(2650Kb)  |  收藏  |  浏览/下载：69/0  |  提交时间：2023/02/24
deep genome skimming  Hyb-Seq  mitochondrial genes  nuclear ribosomal DNA  single-copy nuclear genes  Vitaceae  
Genome-Wide Identification of QTLs for Grain Protein Content Based on Genotyping-by-Resequencing and Verification of qGPC1-1 in Rice 期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2020, 卷号: 21, 期号: 2
作者:  Wu, Yi-Bo;  Li, Guan;  Zhu, Yu-Jun;  Cheng, Yi-Chen;  Yang, Jin-Yu;  Chen, Hui-Zhe;  Song, Xian-Jun;  Ying, Jie-Zheng
Adobe PDF(2186Kb)  |  收藏  |  浏览/下载：85/0  |  提交时间：2022/03/01
quantitative trait locus  grain protein content  single nucleotide polymorphism  residual heterozygote  rice (Oryza sativa)  specific length amplified fragment sequencing  Kjeldahl nitrogen determination  near infrared reflectance spectroscopy  
The Tetracentron genome provides insight into the early evolution of eudicots and the formation of vessel elements 期刊论文
GENOME BIOLOGY, 2020, 卷号: 21, 期号: 1
作者:  Liu, Ping-Li;  Zhang, Xi;  Mao, Jian-Feng;  Hong, Yan-Ming;  Zhang, Ren-Gang;  Yilan, E.;  Nie, Shuai;  Jia, Kaihua;  Jiang, Chen-Kun;  He, Jian;  Shen, Weiwei;  He, Qizouhong;  Zheng, Wenqing;  Abbas, Samar;  Jewaria, Pawan Kumar;  Tian, Xuechan;  Liu, Chang-jun;  Jiang, Xiaomei;  Yin, Yafang;  Liu, Bo;  Wang, Li;  Jin, Biao;  Ma, Yongpeng;  Qiu, Zongbo;  Baluska, Frantisek;  Samaj, Jozef;  He, Xinqiang;  Niu, Shihui;  Xie, Jianbo;  Xie, Lei;  Xu, Huimin;  Kong, Hongzhi;  Ge, Song;  Dixon, Richard A.;  Jiao, Yuannian;  Lin, Jinxing
Adobe PDF(3373Kb)  |  收藏  |  浏览/下载：113/1  |  提交时间：2022/03/01
Tetracentron sinense  Vessel  Phylogenomic  Whole genome duplication  VND7  Resequencing  Genetic diversity  
Resequencing 545 ginkgo genomes across the world reveals the evolutionary history of the living fossil 期刊论文
NATURE COMMUNICATIONS, 2019, 卷号: 10
作者:  Zhao, Yun-Peng;  Fan, Guangyi;  Yin, Ping-Ping;  Sun, Shuai;  Li, Ning;  Hong, Xiaoning;  Hu, Gang;  Zhang, He;  Zhang, Fu-Min;  Han, Jing-Dan;  Hao, Ya-Jun;  Xu, Qiwu;  Yang, Xianwei;  Xia, Wenjie;  Chen, Wenbin;  Lin, Han-Yang;  Zhang, Rui;  Chen, Jiang;  Zheng, Xiao-Ming;  Lee, Simon Ming-Yuen;  Lee, Joongku;  Uehara, Koichi;  Wang, Jian;  Yang, Huanming;  Fu, Cheng-Xin;  Liu, Xin;  Xu, Xun;  Ge, Song
Adobe PDF(2992Kb)  |  收藏  |  浏览/下载：119/0  |  提交时间：2022/01/06
Whole-genome resequencing of 472 Vitis accessions for grapevine diversity and demographic history analyses 期刊论文
NATURE COMMUNICATIONS, 2019, 卷号: 10
作者:  Liang, Zhenchang;  Duan, Shengchang;  Sheng, Jun;  Zhu, Shusheng;  Ni, Xuemei;  Shao, Jianhui;  Liu, Chonghuai;  Nick, Peter;  Du, Fei;  Fan, Peige;  Mao, Ruzhi;  Zhu, Yifan;  Deng, Weiping;  Yang, Min;  Huang, Huichuan;  Liu, Yixiang;  Ding, Yiqing;  Liu, Xianju;  Jiang, Jianfu;  Zhu, Youyong;  Li, Shaohua;  He, Xiahong;  Chen, Wei;  Dong, Yang
Adobe PDF(4282Kb)  |  收藏  |  浏览/下载：136/0  |  提交时间：2022/01/06
Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch 期刊论文
NATURE GENETICS, 2017, 卷号: 49, 期号: 6, 页码: 904+
作者:  Salojarvi, Jarkko;  Smolander, Olli-Pekka;  Nieminen, Kaisa;  Rajaraman, Sitaram;  Safronov, Omid;  Safdari, Pezhman;  Lamminmaki, Airi;  Immanen, Juha;  Lan, Tianying;  Tanskanen, Jaakko;  Rastas, Pasi;  Amiryousefi, Ali;  Jayaprakash, Balamuralikrishna;  Kammonen, Juhana I.;  Hagqvist, Risto;  Eswaran, Gugan;  Ahonen, Viivi Helena;  Serra, Juan Alonso;  Asiegbu, Fred O.;  Barajas-Lopez, Juan de Dios;  Blande, Daniel;  Blokhina, Olga;  Blomster, Tiina;  Broholm, Suvi;  Brosche, Mikael;  Cui, Fuqiang;  Dardick, Chris;  Ehonen, Sanna E.;  Elomaa, Paula;  Escamez, Sacha;  Fagerstedt, Kurt V.;  Fujii, Hiroaki;  Gauthier, Adrien;  Gollan, Peter J.;  Halimaa, Pauliina;  Heino, Pekka I.;  Himanen, Kristiina;  Hollender, Courtney;  Kangasjarvi, Saijaliisa;  Kauppinen, Leila;  Kelleher, Colin T.;  Kontunen-Soppela, Sari;  Koskinen, J. Patrik;  Kovalchuk, Andriy;  Karenlampi, Sirpa O.;  Karkonen, Anna K.;  Lim, Kean-Jin;  Leppala, Johanna;  Macpherson, Lee;  Mikola, Juha;  Mouhu, Katriina;  Mahonen, Ari Pekka;  Niinemets, Ulo;  Oksanen, Elina;  Overmyer, Kirk;  Palva, E. Tapio;  Pazouki, Leila;  Pennanen, Ville;  Puhakainen, Tuula;  Poczai, Peter;  Possen, Boy J. H. M.;  Punkkinen, Matleena;  Rahikainen, Moona M.;  Rousi, Matti;  Ruonala, Raili;  van der Schoot, Christiaan;  Shapiguzov, Alexey;  Sierla, Maija;  Sipila, Timo P.;  Sutela, Suvi;  Teeri, Teemu H.;  Tervahauta, Arja I.;  Vaattovaara, Aleksia;  Vahala, Jorma;  Vetchinnikova, Lidia;  Welling, Annikki;  Wrzaczek, Michael;  Xu, Enjun;  Paulin, Lars G.;  Schulman, Alan H.;  Lascoux, Martin;  Albert, Victor A.;  Auvinen, Petri;  Helariutta, Yka;  Kangasjarvi, Jaakko
Adobe PDF(7504Kb)  |  收藏  |  浏览/下载：1563/0  |  提交时间：2022/03/28
Genome-wide patterns of large-size presence/absence variants in sorghum 期刊论文
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2014, 卷号: 56, 期号: 1, 页码: 24-37
作者:  Zhang, Li-Min;  Luo, Hong;  Liu, Zhi-Quan;  Zhao, Yi;  Luo, Jing-Chu;  Hao, Dong-Yun;  Jing, Hai-Chun
Adobe PDF(4727Kb)  |  收藏  |  浏览/下载：56/0  |  提交时间：2023/03/30
Breeding  genetic diversity  genomics  presence  absence variants  Sorghum bicolour  
Genome variations account for different response to three mineral elements between Medicago truncatula ecotypes Jemalong A17 and R108 期刊论文
BMC PLANT BIOLOGY, 2014, 卷号: 14
作者:  Wang, Tian-Zuo;  Tian, Qiu-Ying;  Wang, Bao-Lan;  Zhao, Min-Gui;  Zhang, Wen-Hao
Adobe PDF(1348Kb)  |  收藏  |  浏览/下载：43/0  |  提交时间：2023/03/30
Resequencing  Medicago truncatula  Aluminum toxicity  Aluminum- activated citrate transporter  Salt stress  MtZpt2-1  Iron deficiency  Yellow Stripe-Likes  
The effects of artificial selection on sugar metabolism and transporter genes in grape 期刊论文
TREE GENETICS & GENOMES, 2013, 卷号: 9, 期号: 5, 页码: 1343-1349
作者:  Xin, Haiping;  Zhang, Jisen;  Zhu, Wei;  Wang, Nian;  Fang, Peige;  Han, Yuepeng;  Ming, Ray;  Li, Shaohua
Adobe PDF(197Kb)  |  收藏  |  浏览/下载：39/0  |  提交时间：2023/04/25
Vitis vinifera  Wild Vitis species  Sugar  SNPs/InDels  Artificial selection