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Integrated phylogenomic analyses unveil reticulate evolution in Parthenocissus (Vitaceae), highlighting speciation dynamics in the Himalayan-Hengduan Mountains 期刊论文
NEW PHYTOLOGIST, 2023, 卷号: 238, 期号: 2, 页码: 888-903
作者:  Yu, Jinren;  Niu, Yanting;  You, Yichen;  Cox, Cymon J.;  Barrett, Russell L.;  Trias-Blasi, Anna;  Guo, Jing;  Wen, Jun;  Lu, Limin;  Chen, Zhiduan
Adobe PDF(4450Kb)  |  收藏  |  浏览/下载：27/0  |  提交时间：2024/03/07
biogeography  comprehensive approach  Himalayan-Hengduan Mountains region  Parthenocissus  phylogenetic discordance  reticulation  speciation reversal  
Species delimitation of the liquorice tribe (Leguminosae: Glycyrrhizeae) based on phylogenomic and machine learning analyses 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2023, 卷号: 61, 期号: 1, 页码: 22-41
作者:  Duan, Lei;  Han, Li-Na;  Liu, Bin-Bin;  Leostrin, Artem;  Harris, A. J.;  Wang, Lin;  Arslan, Emine;  Ertugrul, Kuddisi;  Knyazev, Mikhail;  Hantemirova, Elena;  Wen, Jun;  Chen, Hong-Feng
Adobe PDF(1597Kb)  |  收藏  |  浏览/下载：16/0  |  提交时间：2024/03/07
character evolution  Glycyrrhiza  machine learning analysis  medicinal group  phylogenomics  species delimitation  
Phylogenomic conflict analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex biogeographic history in the Northern Hemisphere 期刊论文
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2022, 卷号: 64, 期号: 5, 页码: 1020-1043
作者:  Liu, Bin-Bin;  Ren, Chen;  Kwak, Myounghai;  Hodel, Richard G. J.;  Xu, Chao;  He, Jian;  Zhou, Wen-Bin;  Huang, Chien-Hsun;  Ma, Hong;  Qian, Guan-Ze;  Hong, De-Yuan;  Wen, Jun
Adobe PDF(3053Kb)  |  收藏  |  浏览/下载：14/0  |  提交时间：2024/03/07
deep genome skimming  genomic discordance  historical biogeography  massive extinction  reticulate evolution  single-copy nuclear genes  
Synthesis of Nuclear and Chloroplast Data Combined With Network Analyses Supports the Polyploid Origin of the Apple Tribe and the Hybrid Origin of the Maleae-Gillenieae Clade 期刊论文
FRONTIERS IN PLANT SCIENCE, 2022, 卷号: 12
作者:  Hodel, Richard G. J.;  Zimmer, Elizabeth A.;  Liu, Bin-Bin;  Wen, Jun
Adobe PDF(3910Kb)  |  收藏  |  浏览/下载：10/0  |  提交时间：2024/03/07
allopolyploidy  ancient hybridization  cytonuclear conflict  genome doubling  phylogenetic networks  phylogenomics  reticulate evolution  
Phylogenomic relationships and species identification of the olive genus Olea (Oleaceae) 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2022, 卷号: 60, 期号: 6, 页码: 1263-1280
作者:  Dong, Wen-Pan;  Sun, Jia-Hui;  Liu, Yan-Lei;  Xu, Chao;  Wang, Yi-Heng;  Suo, Zhi-Li;  Zhou, Shi-Liang;  Zhang, Zhi-Xiang;  Wen, Jun
Adobe PDF(2070Kb)  |  收藏  |  浏览/下载：7/0  |  提交时间：2024/03/07
Olea  phylogenomics  specific DNA barcode  species identification  super-barcode  
On the Species Delimitation of the Maddenia Group of Prunus (Rosaceae): Evidence From Plastome and Nuclear Sequences and Morphology 期刊论文
FRONTIERS IN PLANT SCIENCE, 2021, 卷号: 12
作者:  Su, Na;  Liu, Bin-bin;  Wang, Jun-ru;  Tong, Ru-chang;  Ren, Chen;  Chang, Zhao-yang;  Zhao, Liang;  Potter, Daniel;  Wen, Jun
Adobe PDF(6786Kb)  |  收藏  |  浏览/下载：77/0  |  提交时间：2023/02/24
Maddenia  Prunus  Rosaceae  barcoding  chloroplast genome  single-copy nuclear genes  species delimitation  
Capturing single-copy nuclear genes, organellar genomes, and nuclear ribosomal DNA from deep genome skimming data for plant phylogenetics: A case study in Vitaceae 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2021, 卷号: 59, 期号: 5, 页码: 1124-1138
作者:  Liu, Bin-Bin;  Ma, Zhi-Yao;  Ren, Chen;  Hodel, Richard G. J.;  Sun, Miao;  Liu, Xiu-Qun;  Liu, Guang-Ning;  Hong, De-Yuan;  Zimmer, Elizabeth A.;  Wen, Jun
Adobe PDF(2650Kb)  |  收藏  |  浏览/下载：69/0  |  提交时间：2023/02/24
deep genome skimming  Hyb-Seq  mitochondrial genes  nuclear ribosomal DNA  single-copy nuclear genes  Vitaceae  
An updated phylogenetic and biogeographic analysis based on genome skimming data reveals convergent evolution of shrubby habit in Clematis in the Pliocene and Pleistocene 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2021, 卷号: 164
作者:  He, Jian;  Lyu, Rudan;  Luo, Yike;  Lin, Lele;  Yao, Min;  Xiao, Jiamin;  Xie, Lei;  Wen, Jun;  Pei, Linying;  Yan, Shuangxi;  Cheng, Jin;  Li, Jinyu;  Li, Liangqian
Adobe PDF(9248Kb)  |  收藏  |  浏览/下载：83/0  |  提交时间：2023/02/24
Clematissect  Fruticella  Convergent evolution  Genome skimming  nrDNA  Plastid genome  Phylogeny  
Nuclear and Chloroplast Sequences Resolve the Enigmatic Origin of the Concord Grape 期刊论文
FRONTIERS IN PLANT SCIENCE, 2020, 卷号: 11
作者:  Wen, Jun;  Herron, Sterling A.;  Yang, Xue;  Liu, Bin-Bin;  Zuo, Yun-Juan;  Harris, A. J.;  Kalburgi, Yash;  Johnson, Gabriel;  Zimmer, Elizabeth A.
Adobe PDF(5969Kb)  |  收藏  |  浏览/下载：88/0  |  提交时间：2022/03/01
Concord grape  grape  origin  Vitis  Vitaceae  
Molecular phylogeny and species delimitation of Stachyuraceae: Advocating a herbarium specimen-based phylogenomic approach in resolving species boundaries 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2020, 卷号: 58, 期号: 5, 页码: 710-724
作者:  Su, Jun-Xia;  Dong, Cong-Cong;  Niu, Yan-Ting;  Lu, Li-Min;  Xu, Chao;  Liu, Bing;  Zhou, Shi-Liang;  Lu, An-Ming;  Zhu, Yu-Ping;  Wen, Jun;  Chen, Zhi-Duan
Adobe PDF(1772Kb)  |  收藏  |  浏览/下载：103/0  |  提交时间：2022/03/01
chloroplast genome  DNA reconstruction  phylogeny  specimen-based taxon sampling  Stachyuraceae