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Phylogenomic conflict analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex biogeographic history in the Northern Hemisphere 期刊论文
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2022, 卷号: 64, 期号: 5, 页码: 1020-1043
作者:  Liu, Bin-Bin;  Ren, Chen;  Kwak, Myounghai;  Hodel, Richard G. J.;  Xu, Chao;  He, Jian;  Zhou, Wen-Bin;  Huang, Chien-Hsun;  Ma, Hong;  Qian, Guan-Ze;  Hong, De-Yuan;  Wen, Jun
Adobe PDF(3053Kb)  |  收藏  |  浏览/下载：14/0  |  提交时间：2024/03/07
deep genome skimming  genomic discordance  historical biogeography  massive extinction  reticulate evolution  single-copy nuclear genes  
Phylogenomic relationships and species identification of the olive genus Olea (Oleaceae) 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2022, 卷号: 60, 期号: 6, 页码: 1263-1280
作者:  Dong, Wen-Pan;  Sun, Jia-Hui;  Liu, Yan-Lei;  Xu, Chao;  Wang, Yi-Heng;  Suo, Zhi-Li;  Zhou, Shi-Liang;  Zhang, Zhi-Xiang;  Wen, Jun
Adobe PDF(2070Kb)  |  收藏  |  浏览/下载：8/0  |  提交时间：2024/03/07
Olea  phylogenomics  specific DNA barcode  species identification  super-barcode  
NOVOWrap: An automated solution for plastid genome assembly and structure standardization 期刊论文
MOLECULAR ECOLOGY RESOURCES, 2021, 卷号: 21, 期号: 6, 页码: 2177-2186
作者:  Wu, Ping;  Chen, Hao;  Xu, Chao;  Yang, Jie;  Zhang, Xian Chun;  Zhou, Shi Liang
Adobe PDF(924Kb)  |  收藏  |  浏览/下载：70/1  |  提交时间：2023/02/24
assembly  plastid genome  standardized structure  
Chloroplast phylogenomic insights into the evolution of Distylium (Hamamelidaceae) 期刊论文
BMC GENOMICS, 2021, 卷号: 22, 期号: 1
作者:  Dong, Wenpan;  Liu, Yanlei;  Xu, Chao;  Gao, Yongwei;  Yuan, Qingjun;  Suo, Zhili;  Zhang, Zhixiang;  Sun, Jiahui
Adobe PDF(1731Kb)  |  收藏  |  浏览/下载：96/0  |  提交时间：2023/02/24
Distylium  Hamamelidaceae  Species identification  cpDNA marker  Phylogenomics  
Chloroplast phylogenomics and divergence times of Lagerstroemia (Lythraceae) 期刊论文
BMC GENOMICS, 2021, 卷号: 22, 期号: 1
作者:  Dong, Wenpan;  Xu, Chao;  Liu, Yanlei;  Shi, Jipu;  Li, Wenying;  Suo, Zhili
Adobe PDF(1707Kb)  |  收藏  |  浏览/下载：66/0  |  提交时间：2023/02/24
Lagerstroemia  Chloroplast genome  Phylogeny  Divergence time  
Evolutionary and phylogenetic aspects of the chloroplast genome of Chaenomeles species 期刊论文
SCIENTIFIC REPORTS, 2020, 卷号: 10, 期号: 1
作者:  Sun, Jiahui;  Wang, Yiheng;  Liu, Yanlei;  Xu, Chao;  Yuan, Qingjun;  Guo, Lanping;  Huang, Luqi
Adobe PDF(5382Kb)  |  收藏  |  浏览/下载：95/0  |  提交时间：2022/03/01
The complete chloroplast genome sequence ofMalus toringo(Rosaceae) 期刊论文
MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 卷号: 5, 期号: 3, 页码: 2832-2833
作者:  Li, Yanan;  Liu, Yanlei;  Xu, Chao;  Li, Fengyi;  Wang, Ling;  Zhou, Shiliang
Adobe PDF(927Kb)  |  收藏  |  浏览/下载：96/0  |  提交时间：2022/03/01
Malus toringo  complete chloroplast genome  medicinal value  phylogenetic relationships  
Molecular phylogeny and species delimitation of Stachyuraceae: Advocating a herbarium specimen-based phylogenomic approach in resolving species boundaries 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2020, 卷号: 58, 期号: 5, 页码: 710-724
作者:  Su, Jun-Xia;  Dong, Cong-Cong;  Niu, Yan-Ting;  Lu, Li-Min;  Xu, Chao;  Liu, Bing;  Zhou, Shi-Liang;  Lu, An-Ming;  Zhu, Yu-Ping;  Wen, Jun;  Chen, Zhi-Duan
Adobe PDF(1772Kb)  |  收藏  |  浏览/下载：103/0  |  提交时间：2022/03/01
chloroplast genome  DNA reconstruction  phylogeny  specimen-based taxon sampling  Stachyuraceae  
Evolutionary directions of single nucleotide substitutions and structural mutations in the chloroplast genomes of the family Calycanthaceae 期刊论文
BMC EVOLUTIONARY BIOLOGY, 2020, 卷号: 20, 期号: 1
作者:  Dong, Wenpan;  Xu, Chao;  Wen, Jun;  Zhou, Shiliang
Adobe PDF(870Kb)  |  收藏  |  浏览/下载：93/0  |  提交时间：2022/03/01
Chloroplast genome  Calycanthaceae  Structural mutations  Substitution rate  Indels  
The complete chloroplast genome sequence of Pohlia cruda (Hedw.) Lindb. 期刊论文
MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 卷号: 4, 期号: 2, 页码: 4155-4156
作者:  Zhang, Shijia;  Zhang, Yijie;  Dong, Wenpan;  Wang, Jiangmin;  Wu, Miaoli;  Shen, Fengjiao;  Xu, Chao;  Niu, Jingyuan;  Li, Lin;  Shi, Shuo;  Zhao, Jiancheng
Adobe PDF(789Kb)  |  收藏  |  浏览/下载：99/0  |  提交时间：2022/01/06
Bryales  Bryaceae  Mniaceae  Mielichhoferiaceae  bryophytes