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The associated evolution among the extensive RNA editing, GC-biased mutation, and PPR family expansion in the organelle genomes of Selaginellaceae 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2022
作者:  Kang, Jong-Soo;  Yu, Jigao;  Zhang, Xian-Chun;  Xiang, Qiao-Ping
Adobe PDF(1627Kb)  |  收藏  |  浏览/下载：10/0  |  提交时间：2024/03/07
GC-biased mutation  mitochondrial genome (mitogenome)  pentatricopeptide repeat (PPR) protein  plastid genome (plastome)  RNA editing  Selaginellaceae  
The evolution of extremely diverged plastomes in Selaginellaceae (lycophyte) is driven by repeat patterns and the underlying DNA maintenance machinery 期刊论文
PLANT JOURNAL, 2022, 卷号: 111, 期号: 3, 页码: 768-784
作者:  Xiang, Qiao-Ping;  Tang, Jun-Yong;  Yu, Ji-Gao;  Smith, David Roy;  Zhu, Yan-Mei;  Wang, Ya-Rong;  Kang, Jong-Soo;  Yang, Jie;  Zhang, Xian-Chun
Adobe PDF(1628Kb)  |  收藏  |  浏览/下载：14/0  |  提交时间：2024/03/07
Selaginella sinensis  network plastome  perfect repeats  dynamic mitogenome  GC content  RNA editing  
Plastid phylogenomic analyses of the Selaginella sanguinolenta group (Selaginellaceae) reveal conflict signatures resulting from sequence types, outlier genes, and pervasive RNA editing 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2022, 卷号: 173
作者:  Zhang, Meng-Hua;  Xiang, Qiao-Ping;  Zhang, Xian-Chun
Adobe PDF(5084Kb)  |  收藏  |  浏览/下载：10/0  |  提交时间：2024/03/07
Alternative topologies  Gene-tree conflict  Plastome  Phylogenetic signal  Selaginella sanguinolenta group  Species trees  
Plastome-based phylogenomics resolves the placement of the sanguinolenta group in the spikemoss of lycophyte (Selaginellaceae) 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2020, 卷号: 147
作者:  Zhang, Hong-Rui;  Wei, Ran;  Xiang, Qiao-Ping;  Zhang, Xian-Chun
Adobe PDF(1456Kb)  |  收藏  |  浏览/下载：91/0  |  提交时间：2022/03/01
GC content  Nucleotide substitution rate  Phylogeny  Plastome  Sanguinolenta group  
Distinctive evolutionary pattern of organelle genomes linked to the nuclear genome in Selaginellaceae 期刊论文
PLANT JOURNAL, 2020, 卷号: 104, 期号: 6, 页码: 1657-1672
作者:  Kang, Jong-Soo;  Zhang, Hong-Rui;  Wang, Ya-Rong;  Liang, Si-Qi;  Mao, Zhi-Yuan;  Zhang, Xian-Chun;  Xiang, Qiao-Ping
Adobe PDF(1546Kb)  |  收藏  |  浏览/下载：119/0  |  提交时间：2022/03/01
Selaginella  plastid genome  mitochondrial genome  genome evolution  convergent evolution  RecA  
Directed Repeats Co-occur with Few Short-Dispersed Repeats in Plastid Genome of a Spikemoss, Selaginella vardei (Selaginellaceae, Lycopodiopsida) 期刊论文
BMC GENOMICS, 2019, 卷号: 20
作者:  Zhang, Hong-Rui;  Zhang, Xian-Chun;  Xiang, Qiao-Ping
Adobe PDF(1747Kb)  |  收藏  |  浏览/下载：80/0  |  提交时间：2022/01/06
direct repeat  inversion  inverted repeat  plastome evolution  short dispersed repeats  
The Unique Evolutionary Trajectory and Dynamic Conformations of DR and IR/DR-Coexisting Plastomes of the Early Vascular Plant Selaginellaceae (Lycophyte) 期刊论文
GENOME BIOLOGY AND EVOLUTION, 2019, 卷号: 11, 期号: 4, 页码: 1258-1274
作者:  Zhang, Hong-Rui;  Xiang, Qiao-Ping;  Zhang, Xian-Chun
Adobe PDF(1212Kb)  |  收藏  |  浏览/下载：86/0  |  提交时间：2022/01/06
gene loss  homologous recombination  DR/IR evolution  Selaginella  substitution rate  time divergence  
Plastid Phylogenomics Resolve Deep Relationships among Eupolypod II Ferns with Rapid Radiation and Rate Heterogeneity 期刊论文
GENOME BIOLOGY AND EVOLUTION, 2017, 卷号: 9, 期号: 6, 页码: 1646-1657
作者:  Wei, Ran;  Yan, Yue-Hong;  Harris, A. J.;  Kang, Jong-Soo;  Shen, Hui;  Xiang, Qiao-Ping;  Zhang, Xian-Chun
Adobe PDF(2037Kb)  |  收藏  |  浏览/下载：70/0  |  提交时间：2022/03/28
Aspleniaceae  Athyriaceae  backbone phylogeny  plastome  substitution rate  Rhachidosoraceae