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Phylogenomic conflict analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex biogeographic history in the Northern Hemisphere 期刊论文
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2022, 卷号: 64, 期号: 5, 页码: 1020-1043
作者:  Liu, Bin-Bin;  Ren, Chen;  Kwak, Myounghai;  Hodel, Richard G. J.;  Xu, Chao;  He, Jian;  Zhou, Wen-Bin;  Huang, Chien-Hsun;  Ma, Hong;  Qian, Guan-Ze;  Hong, De-Yuan;  Wen, Jun
Adobe PDF(3053Kb)  |  收藏  |  浏览/下载：14/0  |  提交时间：2024/03/07
deep genome skimming  genomic discordance  historical biogeography  massive extinction  reticulate evolution  single-copy nuclear genes  
Genomes of leafy and leafless Platanthera orchids illuminate the evolution of mycoheterotrophy 期刊论文
NATURE PLANTS, 2022, 卷号: 8, 期号: 4, 页码: 373+
作者:  Li, Ming-He;  Liu, Ke-Wei;  Li, Zhen;  Lu, Hsiang-Chia;  Ye, Qin-Liang;  Zhang, Diyang;  Wang, Jie-Yu;  Li, Yu-Feng;  Zhong, Zhi-Ming;  Liu, Xuedie;  Yu, Xia;  Liu, Ding-Kun;  Tu, Xiong-De;  Liu, Bin;  Hao, Yang;  Liao, Xing-Yu;  Jiang, Yu-Ting;  Sun, Wei-Hong;  Chen, Jinliao;  Chen, Yan-Qiong;  Ai, Ye;  Zhai, Jun-Wen;  Wu, Sha-Sha;  Zhou, Zhuang;  Hsiao, Yu-Yun;  Wu, Wan-Lin;  Chen, You-Yi;  Lin, Yu-Fu;  Hsu, Jui-Ling;  Li, Chia-Ying;  Wang, Zhi-Wen;  Zhao, Xiang;  Zhong, Wen-Ying;  Ma, Xiao-Kai;  Ma, Liang;  Huang, Jie;  Chen, Gui-Zhen;  Huang, Ming-Zhong;  Huang, Laiqiang;  Peng, Dong-Hui;  Luo, Yi-Bo;  Zou, Shuang-Quan;  Chen, Shi-Pin;  Lan, Siren;  Tsai, Wen-Chieh;  van de Peer, Yves;  Liu, Zhong-Jian
Adobe PDF(8532Kb)  |  收藏  |  浏览/下载：11/0  |  提交时间：2024/03/07
Loss of innovative traits underlies multiple origins of Aquilegia ecalcarata 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2022, 卷号: 60, 期号: 6, 页码: 1291-1302
作者:  Geng, Fang-Dong;  Xie, Jing-He;  Xue, Cheng;  Sun, Li;  Li, Jiao-Jie;  Niu, Chen-Yu;  Huang, Lei;  Zhang, Xiao-Hui;  Kang, Ju-Qing;  Kong, Hong-Zhi;  Ren, Yi;  Zhang, Jian-Qiang
Adobe PDF(3573Kb)  |  收藏  |  浏览/下载：16/0  |  提交时间：2024/03/07
Aquilegia  divergence  ecalcarata  gene introgression  parallel origion  Spurless  
Taxonomy notes on Vandeae (Orchidaceae) from China: Five new species and two new records 期刊论文
PLANT DIVERSITY, 2021, 卷号: 43, 期号: 5, 页码: 379-389
作者:  Li, Jian-Wu;  Ya, Ji-Dong;  Ye, De-Ping;  Liu, Cheng;  Liu, Qiang;  Pan, Rui;  He, Zai-Xing;  Pan, Bo;  Cai, Jie;  Lin, Dong-Liang;  Jin, Xiao-Hua
Adobe PDF(3707Kb)  |  收藏  |  浏览/下载：73/0  |  提交时间：2023/02/24
New species  New records  Orchidaceae  Vandeae  China  
Natural Hybrid Origin of the Controversial Species Clematis x pinnata (Ranunculaceae) Based on Multidisciplinary Evidence 期刊论文
FRONTIERS IN PLANT SCIENCE, 2021, 卷号: 12
作者:  Lyu, Rudan;  He, Jian;  Luo, Yike;  Lin, Lele;  Yao, Min;  Cheng, Jin;  Xie, Lei;  Pei, Linying;  Yan, Shuangxi;  Li, Liangqian
Adobe PDF(9920Kb)  |  收藏  |  浏览/下载：67/0  |  提交时间：2023/02/24
Clematis  homoploid hybridization  morphology  niche modeling  phylogenomic analysis  species status  
An updated phylogenetic and biogeographic analysis based on genome skimming data reveals convergent evolution of shrubby habit in Clematis in the Pliocene and Pleistocene 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2021, 卷号: 164
作者:  He, Jian;  Lyu, Rudan;  Luo, Yike;  Lin, Lele;  Yao, Min;  Xiao, Jiamin;  Xie, Lei;  Wen, Jun;  Pei, Linying;  Yan, Shuangxi;  Cheng, Jin;  Li, Jinyu;  Li, Liangqian
Adobe PDF(9248Kb)  |  收藏  |  浏览/下载：83/0  |  提交时间：2023/02/24
Clematissect  Fruticella  Convergent evolution  Genome skimming  nrDNA  Plastid genome  Phylogeny  
Pleistocene vegetation in Guangxi, south China, based on palynological data from seven karst caves 期刊论文
GRANA, 2020, 卷号: 59, 期号: 1, 页码: 94-106
作者:  Li, Su-Ping;  Ferguson, David Kay;  Wang, Nai-Wen;  He, Xi-Xian;  Ya, Jian-Xin;  Li, Jin-Feng
Adobe PDF(10180Kb)  |  收藏  |  浏览/下载：78/0  |  提交时间：2022/03/01
cave deposit  palynology  environmental background  Chongzuo  
A Middle Eocene lowland humid subtropical Shangri-La ecosystem in central Tibet 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 卷号: 117, 期号: 52, 页码: 32989-32995
作者:  Su, Tao;  Spicer, Robert A.;  Wu, Fei-Xiang;  Farnsworth, Alexander;  Huang, Jian;  Del Rio, Cedric;  Deng, Tao;  Ding, Lin;  Deng, Wei-Yu-Dong;  Huang, Yong-Jiang;  Hughes, Alice;  Jia, Lin-Bo;  Jin, Jian-Hua;  Li, Shu-Feng;  Liang, Shui-Qing;  Liu, Jia;  Liu, Xiao-Yan;  Sherlock, Sarah;  Spicer, Teresa;  Srivastava, Gaurav;  Tang, He;  Valdes, Paul;  Wang, Teng-Xiang;  Widdowson, Mike;  Wu, Meng-Xiao;  Xing, Yao-Wu;  Xu, Cong-Li;  Yang, Jian;  Zhang, Cong;  Zhang, Shi-Tao;  Zhang, Xin-Wen;  Zhao, Fan;  Zhou, Zhe-Kun
Adobe PDF(2486Kb)  |  收藏  |  浏览/下载：86/0  |  提交时间：2022/03/01
biodiversity  fossil  monsoon  Tibetan Plateau  topography  
The hornwort genome and early land plant evolution 期刊论文
NATURE PLANTS, 2020, 卷号: 6, 期号: 2, 页码: 107-118
作者:  Zhang, Jian;  Fu, Xin-Xing;  Li, Rui-Qi;  Zhao, Xiang;  Liu, Yang;  Li, Ming-He;  Zwaenepoel, Arthur;  Ma, Hong;  Goffinet, Bernard;  Guan, Yan-Long;  Xue, Jia-Yu;  Liao, Yi-Ying;  Wang, Qing-Feng;  Wang, Qing-Hua;  Wang, Jie-Yu;  Zhang, Guo Qiang;  Wang, Zhi-Wen;  Jia, Yu;  Wang, Mei-Zhi;  Dong, Shan-Shan;  Yang, Jian-Fen;  Jiao, Yuan-Nian;  Guo, Ya-Long;  Kong, Hong-Zhi;  Lu, An-Ming;  Yang, Huan-Ming;  Zhang, Shou-Zhou;  Van de Peer, Yves;  Liu, Zhong-Jian;  Chen, Zhi-Duan
Adobe PDF(1845Kb)  |  收藏  |  浏览/下载：110/1  |  提交时间：2022/03/01
The Tetracentron genome provides insight into the early evolution of eudicots and the formation of vessel elements 期刊论文
GENOME BIOLOGY, 2020, 卷号: 21, 期号: 1
作者:  Liu, Ping-Li;  Zhang, Xi;  Mao, Jian-Feng;  Hong, Yan-Ming;  Zhang, Ren-Gang;  Yilan, E.;  Nie, Shuai;  Jia, Kaihua;  Jiang, Chen-Kun;  He, Jian;  Shen, Weiwei;  He, Qizouhong;  Zheng, Wenqing;  Abbas, Samar;  Jewaria, Pawan Kumar;  Tian, Xuechan;  Liu, Chang-jun;  Jiang, Xiaomei;  Yin, Yafang;  Liu, Bo;  Wang, Li;  Jin, Biao;  Ma, Yongpeng;  Qiu, Zongbo;  Baluska, Frantisek;  Samaj, Jozef;  He, Xinqiang;  Niu, Shihui;  Xie, Jianbo;  Xie, Lei;  Xu, Huimin;  Kong, Hongzhi;  Ge, Song;  Dixon, Richard A.;  Jiao, Yuannian;  Lin, Jinxing
Adobe PDF(3373Kb)  |  收藏  |  浏览/下载：114/1  |  提交时间：2022/03/01
Tetracentron sinense  Vessel  Phylogenomic  Whole genome duplication  VND7  Resequencing  Genetic diversity