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Species delimitation of the liquorice tribe (Leguminosae: Glycyrrhizeae) based on phylogenomic and machine learning analyses 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2023, 卷号: 61, 期号: 1, 页码: 22-41
作者:  Duan, Lei;  Han, Li-Na;  Liu, Bin-Bin;  Leostrin, Artem;  Harris, A. J.;  Wang, Lin;  Arslan, Emine;  Ertugrul, Kuddisi;  Knyazev, Mikhail;  Hantemirova, Elena;  Wen, Jun;  Chen, Hong-Feng
Adobe PDF(1597Kb)  |  收藏  |  浏览/下载：14/0  |  提交时间：2024/03/07
character evolution  Glycyrrhiza  machine learning analysis  medicinal group  phylogenomics  species delimitation  
Phylogenomic conflict analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex biogeographic history in the Northern Hemisphere 期刊论文
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2022, 卷号: 64, 期号: 5, 页码: 1020-1043
作者:  Liu, Bin-Bin;  Ren, Chen;  Kwak, Myounghai;  Hodel, Richard G. J.;  Xu, Chao;  He, Jian;  Zhou, Wen-Bin;  Huang, Chien-Hsun;  Ma, Hong;  Qian, Guan-Ze;  Hong, De-Yuan;  Wen, Jun
Adobe PDF(3053Kb)  |  收藏  |  浏览/下载：14/0  |  提交时间：2024/03/07
deep genome skimming  genomic discordance  historical biogeography  massive extinction  reticulate evolution  single-copy nuclear genes  
Synthesis of Nuclear and Chloroplast Data Combined With Network Analyses Supports the Polyploid Origin of the Apple Tribe and the Hybrid Origin of the Maleae-Gillenieae Clade 期刊论文
FRONTIERS IN PLANT SCIENCE, 2022, 卷号: 12
作者:  Hodel, Richard G. J.;  Zimmer, Elizabeth A.;  Liu, Bin-Bin;  Wen, Jun
Adobe PDF(3910Kb)  |  收藏  |  浏览/下载：6/0  |  提交时间：2024/03/07
allopolyploidy  ancient hybridization  cytonuclear conflict  genome doubling  phylogenetic networks  phylogenomics  reticulate evolution  
On the Species Delimitation of the Maddenia Group of Prunus (Rosaceae): Evidence From Plastome and Nuclear Sequences and Morphology 期刊论文
FRONTIERS IN PLANT SCIENCE, 2021, 卷号: 12
作者:  Su, Na;  Liu, Bin-bin;  Wang, Jun-ru;  Tong, Ru-chang;  Ren, Chen;  Chang, Zhao-yang;  Zhao, Liang;  Potter, Daniel;  Wen, Jun
Adobe PDF(6786Kb)  |  收藏  |  浏览/下载：76/0  |  提交时间：2023/02/24
Maddenia  Prunus  Rosaceae  barcoding  chloroplast genome  single-copy nuclear genes  species delimitation  
Capturing single-copy nuclear genes, organellar genomes, and nuclear ribosomal DNA from deep genome skimming data for plant phylogenetics: A case study in Vitaceae 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2021, 卷号: 59, 期号: 5, 页码: 1124-1138
作者:  Liu, Bin-Bin;  Ma, Zhi-Yao;  Ren, Chen;  Hodel, Richard G. J.;  Sun, Miao;  Liu, Xiu-Qun;  Liu, Guang-Ning;  Hong, De-Yuan;  Zimmer, Elizabeth A.;  Wen, Jun
Adobe PDF(2650Kb)  |  收藏  |  浏览/下载：69/0  |  提交时间：2023/02/24
deep genome skimming  Hyb-Seq  mitochondrial genes  nuclear ribosomal DNA  single-copy nuclear genes  Vitaceae  
Nuclear and Chloroplast Sequences Resolve the Enigmatic Origin of the Concord Grape 期刊论文
FRONTIERS IN PLANT SCIENCE, 2020, 卷号: 11
作者:  Wen, Jun;  Herron, Sterling A.;  Yang, Xue;  Liu, Bin-Bin;  Zuo, Yun-Juan;  Harris, A. J.;  Kalburgi, Yash;  Johnson, Gabriel;  Zimmer, Elizabeth A.
Adobe PDF(5969Kb)  |  收藏  |  浏览/下载：85/0  |  提交时间：2022/03/01
Concord grape  grape  origin  Vitis  Vitaceae  
A synopsis of the expanded Rhaphiolepis (Maleae, Rosaceae) 期刊论文
PHYTOKEYS, 2020, 期号: 154, 页码: 19-55
作者:  Liu, Bin-Bin;  Wang, Yu-Bing;  Hong, De-Yuan;  Wen, Jun
Adobe PDF(2482Kb)  |  收藏  |  浏览/下载：97/0  |  提交时间：2022/03/01
Eriobotrya  lectotype  new name  nomenclature  taxonomy  typification  validation  
The complete chloroplast genome sequence of Magnolia mexicana DC. (Magnoliaceae) from Central America 期刊论文
MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 卷号: 5, 期号: 1, 页码: 798-799
作者:  Liu, Guang-Ning;  Liu, Bin-Bin;  Wen, Jun;  Wang, Yu-Bing
Adobe PDF(967Kb)  |  收藏  |  浏览/下载：74/0  |  提交时间：2022/03/01
Chloroplast genome  Magnolia mexicana  Magnolia  Magnoliaceae  phylogeny  
Major clades and a revised classification of Magnolia and Magnoliaceae based on whole plastid genome sequences via genome skimming 期刊论文
JOURNAL OF SYSTEMATICS AND EVOLUTION, 2020, 卷号: 58, 期号: 5, 页码: 673-695
作者:  Wang, Yu-Bing;  Liu, Bin-Bin;  Nie, Ze-Long;  Chen, Hong-Feng;  Chen, Fa-Ju;  Figlar, Richard B.;  Wen, Jun
Adobe PDF(20587Kb)  |  收藏  |  浏览/下载：76/0  |  提交时间：2022/03/01
classification  genome skimming  Magnolia  Magnoliaceae  plastome  taxonomy  
Phylogenetic relationships and chloroplast capture in the Amelanchier-Malacomeles-Peraphyllum clade (Maleae, Rosaceae): Evidence from chloroplast genome and nuclear ribosomal DNA data using genome skimming 期刊论文
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2020, 卷号: 147
作者:  Liu, Bin-Bin;  Campbell, Christopher S.;  Hong, De-Yuan;  Wen, Jun
Adobe PDF(2972Kb)  |  收藏  |  浏览/下载：90/0  |  提交时间：2022/03/01
Chloroplast capture  Hybridization  Maleae  Nuclear ribosomal DNA  Plastome  Rosaceae